corHMM: Hidden Markov Models of Character Evolution

Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.

Version: 2.5
Depends: ape, nloptr, GenSA
Imports: expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel, viridis, Rmpfr, igraph, phytools
Suggests: testthat, knitr, rmarkdown
Published: 2020-11-24
Author: Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Jeffrey Oliver [aut], James Boyko [aut]
Maintainer: Jeremy Beaulieu <jmbeauli at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: corHMM results


Reference manual: corHMM.pdf
Vignettes: Generalized corHMM
Package source: corHMM_2.5.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release: corHMM_2.5.tgz, r-oldrel: corHMM_2.5.tgz
Old sources: corHMM archive


Please use the canonical form to link to this page.