CRAN Package Check Results for Package isoreader

Last updated on 2020-12-04 00:48:24 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.7 18.54 256.74 275.28 OK
r-devel-linux-x86_64-debian-gcc 1.2.7 14.82 190.77 205.59 OK
r-devel-linux-x86_64-fedora-clang 1.2.7 326.18 OK
r-devel-linux-x86_64-fedora-gcc 1.2.7 324.40 OK
r-devel-windows-ix86+x86_64 1.2.7 34.00 232.00 266.00 OK
r-patched-linux-x86_64 1.2.7 17.62 252.23 269.85 OK
r-patched-solaris-x86 1.2.7 366.40 WARN
r-release-linux-x86_64 1.2.7 16.82 249.35 266.17 OK
r-release-macos-x86_64 1.2.7 WARN
r-release-windows-ix86+x86_64 1.2.7 25.00 253.00 278.00 OK
r-oldrel-macos-x86_64 1.2.7 WARN
r-oldrel-windows-ix86+x86_64 1.2.7 24.00 306.00 330.00 OK

Check Details

Version: 1.2.7
Check: installed package size
Result: NOTE
     installed size is 5.4Mb
     sub-directories of 1Mb or more:
     extdata 3.4Mb
Flavor: r-patched-solaris-x86

Version: 1.2.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘continuous_flow.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    Quitting from lines 42-44 (continuous_flow.Rmd)
    Error: processing vignette 'continuous_flow.Rmd' failed with diagnostics:
    unused argument (options = list(TRUE, TRUE, "markup", FALSE, NULL, TRUE, FALSE, "#>", TRUE, TRUE, "normalsize", "#F7F7F7", 0, "cache/", NULL, TRUE, NULL, FALSE, FALSE, "high", "asis", "default", "figure/", "png", NULL, 72, "png", 7, 7, "figure", NULL, NULL, "fig:", NULL, "", NULL, NULL, NULL, 1, TRUE, FALSE, 1, "controls,loop", TRUE, FALSE, FALSE, NULL, NULL, NULL, "R", FALSE, TRUE, TRUE, "unnamed-chunk-2", c("# all available examples", "iso_get_reader_examples() %>% rmarkdown::paged_table()"), 504, 504,
     " message = FALSE"))
    --- failed re-building ‘continuous_flow.Rmd’
    
    --- re-building ‘development.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 36-52 (development.Rmd)
    Error: processing vignette 'development.Rmd' failed with diagnostics:
    unused argument (options = list(TRUE, TRUE, "markup", FALSE, NULL, TRUE, FALSE, "#>", TRUE, TRUE, "normalsize", "#F7F7F7", 0, "cache/", NULL, TRUE, NULL, FALSE, FALSE, "high", "asis", "default", "figure/", "png", NULL, 72, "png", 7, 7, "figure", NULL, NULL, "fig:", NULL, "", NULL, NULL, NULL, 1, TRUE, FALSE, 1, "controls,loop", TRUE, FALSE, TRUE, NULL, NULL, NULL, "R", FALSE, TRUE, TRUE, "unnamed-chunk-1", c("new_reader <- function(ds, options = list()) {", " isoreader:::log_message(\"this is the new reader!\")",
    " str(ds)", " return(ds)", "}", "", "# register new reader", "readers <- iso_register_dual_inlet_file_reader(\".new.did\", \"new_reader\")", "rmarkdown::paged_table(readers)", "", "# copy an example file from the package with the new extension", "iso_get_reader_example(\"dual_inlet_example.did\") %>% file.copy(to = \"example.new.did\")", "", "# read the file", "iso_read_dual_inlet(\"example.new.did\", read_cache = FALSE)", "file.remove(\"example.new.did\")"), 504, 504, ""))
    --- failed re-building ‘development.Rmd’
    
    --- re-building ‘dual_inlet.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    Quitting from lines 45-47 (dual_inlet.Rmd)
    Error: processing vignette 'dual_inlet.Rmd' failed with diagnostics:
    unused argument (options = list(TRUE, TRUE, "markup", FALSE, NULL, TRUE, FALSE, "#>", TRUE, TRUE, "normalsize", "#F7F7F7", 0, "cache/", NULL, TRUE, NULL, FALSE, FALSE, "high", "asis", "default", "figure/", "png", NULL, 72, "png", 7, 7, "figure", NULL, NULL, "fig:", NULL, "", NULL, NULL, NULL, 1, TRUE, FALSE, 1, "controls,loop", TRUE, FALSE, FALSE, NULL, NULL, NULL, "R", FALSE, TRUE, TRUE, "unnamed-chunk-2", c("# all available examples", "iso_get_reader_examples() %>% rmarkdown::paged_table()"), 504, 504,
     " message=FALSE"))
    --- failed re-building ‘dual_inlet.Rmd’
    
    --- re-building ‘operations.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    --- finished re-building ‘operations.Rmd’
    
    --- re-building ‘quick_start.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    Quitting from lines 43-45 (quick_start.Rmd)
    Error: processing vignette 'quick_start.Rmd' failed with diagnostics:
    unused argument (options = list(TRUE, TRUE, "markup", FALSE, NULL, TRUE, FALSE, "#>", TRUE, TRUE, "normalsize", "#F7F7F7", 0, "cache/", NULL, TRUE, NULL, FALSE, FALSE, "high", "asis", "default", "figure/", "png", NULL, 72, "png", 7, 7, "figure", NULL, NULL, "fig:", NULL, "", NULL, NULL, NULL, 1, TRUE, FALSE, 1, "controls,loop", TRUE, FALSE, TRUE, NULL, NULL, NULL, "R", FALSE, TRUE, TRUE, "unnamed-chunk-2", c("# all available examples", "iso_get_reader_examples() %>% rmarkdown::paged_table()"), 504, 504,
     ""))
    --- failed re-building ‘quick_start.Rmd’
    
    --- re-building ‘scan.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    Quitting from lines 47-49 (scan.Rmd)
    Error: processing vignette 'scan.Rmd' failed with diagnostics:
    unused argument (options = list(TRUE, TRUE, "markup", FALSE, NULL, TRUE, FALSE, "#>", TRUE, TRUE, "normalsize", "#F7F7F7", 0, "cache/", NULL, TRUE, NULL, FALSE, FALSE, "high", "asis", "default", "figure/", "png", NULL, 72, "png", 7, 7, "figure", NULL, NULL, "fig:", NULL, "", NULL, NULL, NULL, 1, TRUE, FALSE, 1, "controls,loop", TRUE, FALSE, FALSE, NULL, NULL, NULL, "R", FALSE, TRUE, TRUE, "unnamed-chunk-2", c("# all available examples", "iso_get_reader_examples() %>% rmarkdown::paged_table()"), 504, 504,
     " message=FALSE"))
    --- failed re-building ‘scan.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘continuous_flow.Rmd’ ‘development.Rmd’ ‘dual_inlet.Rmd’
     ‘quick_start.Rmd’ ‘scan.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.2.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘continuous_flow.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    Quitting from lines 42-44 (continuous_flow.Rmd)
    Error: processing vignette 'continuous_flow.Rmd' failed with diagnostics:
    unused argument (options = list(TRUE, TRUE, "markup", FALSE, NULL, TRUE, FALSE, "#>", TRUE, TRUE, "normalsize", "#F7F7F7", 0, "cache/", NULL, TRUE, NULL, FALSE, FALSE, "high", "asis", "default", "figure/", "png", NULL, 72, "png", 7, 7, "figure", NULL, NULL, "fig:", NULL, "", NULL, NULL, NULL, 1, TRUE, FALSE, 1, "controls,loop", TRUE, FALSE, FALSE, NULL, NULL, NULL, "R", FALSE, TRUE, TRUE, "unnamed-chunk-2", c("# all available examples", "iso_get_reader_examples() %>% rmarkdown::paged_table()"), 504, 504,
     " message = FALSE"))
    --- failed re-building ‘continuous_flow.Rmd’
    
    --- re-building ‘development.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 36-52 (development.Rmd)
    Error: processing vignette 'development.Rmd' failed with diagnostics:
    unused argument (options = list(TRUE, TRUE, "markup", FALSE, NULL, TRUE, FALSE, "#>", TRUE, TRUE, "normalsize", "#F7F7F7", 0, "cache/", NULL, TRUE, NULL, FALSE, FALSE, "high", "asis", "default", "figure/", "png", NULL, 72, "png", 7, 7, "figure", NULL, NULL, "fig:", NULL, "", NULL, NULL, NULL, 1, TRUE, FALSE, 1, "controls,loop", TRUE, FALSE, TRUE, NULL, NULL, NULL, "R", FALSE, TRUE, TRUE, "unnamed-chunk-1", c("new_reader <- function(ds, options = list()) {", " isoreader:::log_message(\"this is the new reader!\")",
    " str(ds)", " return(ds)", "}", "", "# register new reader", "readers <- iso_register_dual_inlet_file_reader(\".new.did\", \"new_reader\")", "rmarkdown::paged_table(readers)", "", "# copy an example file from the package with the new extension", "iso_get_reader_example(\"dual_inlet_example.did\") %>% file.copy(to = \"example.new.did\")", "", "# read the file", "iso_read_dual_inlet(\"example.new.did\", read_cache = FALSE)", "file.remove(\"example.new.did\")"), 504, 504, ""))
    --- failed re-building ‘development.Rmd’
    
    --- re-building ‘dual_inlet.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    Quitting from lines 45-47 (dual_inlet.Rmd)
    Error: processing vignette 'dual_inlet.Rmd' failed with diagnostics:
    unused argument (options = list(TRUE, TRUE, "markup", FALSE, NULL, TRUE, FALSE, "#>", TRUE, TRUE, "normalsize", "#F7F7F7", 0, "cache/", NULL, TRUE, NULL, FALSE, FALSE, "high", "asis", "default", "figure/", "png", NULL, 72, "png", 7, 7, "figure", NULL, NULL, "fig:", NULL, "", NULL, NULL, NULL, 1, TRUE, FALSE, 1, "controls,loop", TRUE, FALSE, FALSE, NULL, NULL, NULL, "R", FALSE, TRUE, TRUE, "unnamed-chunk-2", c("# all available examples", "iso_get_reader_examples() %>% rmarkdown::paged_table()"), 504, 504,
     " message=FALSE"))
    --- failed re-building ‘dual_inlet.Rmd’
    
    --- re-building ‘operations.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    --- finished re-building ‘operations.Rmd’
    
    --- re-building ‘quick_start.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    Quitting from lines 43-45 (quick_start.Rmd)
    Error: processing vignette 'quick_start.Rmd' failed with diagnostics:
    unused argument (options = list(TRUE, TRUE, "markup", FALSE, NULL, TRUE, FALSE, "#>", TRUE, TRUE, "normalsize", "#F7F7F7", 0, "cache/", NULL, TRUE, NULL, FALSE, FALSE, "high", "asis", "default", "figure/", "png", NULL, 72, "png", 7, 7, "figure", NULL, NULL, "fig:", NULL, "", NULL, NULL, NULL, 1, TRUE, FALSE, 1, "controls,loop", TRUE, FALSE, TRUE, NULL, NULL, NULL, "R", FALSE, TRUE, TRUE, "unnamed-chunk-2", c("# all available examples", "iso_get_reader_examples() %>% rmarkdown::paged_table()"), 504, 504,
     ""))
    --- failed re-building ‘quick_start.Rmd’
    
    --- re-building ‘scan.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    Quitting from lines 47-49 (scan.Rmd)
    Error: processing vignette 'scan.Rmd' failed with diagnostics:
    unused argument (options = list(TRUE, TRUE, "markup", FALSE, NULL, TRUE, FALSE, "#>", TRUE, TRUE, "normalsize", "#F7F7F7", 0, "cache/", NULL, TRUE, NULL, FALSE, FALSE, "high", "asis", "default", "figure/", "png", NULL, 72, "png", 7, 7, "figure", NULL, NULL, "fig:", NULL, "", NULL, NULL, NULL, 1, TRUE, FALSE, 1, "controls,loop", TRUE, FALSE, FALSE, NULL, NULL, NULL, "R", FALSE, TRUE, TRUE, "unnamed-chunk-2", c("# all available examples", "iso_get_reader_examples() %>% rmarkdown::paged_table()"), 504, 504,
     " message=FALSE"))
    --- failed re-building ‘scan.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘continuous_flow.Rmd’ ‘development.Rmd’ ‘dual_inlet.Rmd’
     ‘quick_start.Rmd’ ‘scan.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-x86_64

Version: 1.2.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘continuous_flow.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    Quitting from lines 42-44 (continuous_flow.Rmd)
    Error: processing vignette 'continuous_flow.Rmd' failed with diagnostics:
    unused argument (options = options)
    --- failed re-building ‘continuous_flow.Rmd’
    
    --- re-building ‘development.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 36-52 (development.Rmd)
    Error: processing vignette 'development.Rmd' failed with diagnostics:
    unused argument (options = options)
    --- failed re-building ‘development.Rmd’
    
    --- re-building ‘dual_inlet.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    Quitting from lines 45-47 (dual_inlet.Rmd)
    Error: processing vignette 'dual_inlet.Rmd' failed with diagnostics:
    unused argument (options = options)
    --- failed re-building ‘dual_inlet.Rmd’
    
    --- re-building ‘operations.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    --- finished re-building ‘operations.Rmd’
    
    --- re-building ‘quick_start.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    Quitting from lines 43-45 (quick_start.Rmd)
    Error: processing vignette 'quick_start.Rmd' failed with diagnostics:
    unused argument (options = options)
    --- failed re-building ‘quick_start.Rmd’
    
    --- re-building ‘scan.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'isoreader'
    
    The following object is masked from 'package:stats':
    
     filter
    
    Quitting from lines 47-49 (scan.Rmd)
    Error: processing vignette 'scan.Rmd' failed with diagnostics:
    unused argument (options = options)
    --- failed re-building ‘scan.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘continuous_flow.Rmd’ ‘development.Rmd’ ‘dual_inlet.Rmd’
     ‘quick_start.Rmd’ ‘scan.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-macos-x86_64