CRAN Package Check Results for Package Rmpfr

Last updated on 2020-12-04 00:48:32 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.8-2 20.63 175.14 195.77 OK
r-devel-linux-x86_64-debian-gcc 0.8-2 15.87 133.21 149.08 OK
r-devel-linux-x86_64-fedora-clang 0.8-2 258.24 OK
r-devel-linux-x86_64-fedora-gcc 0.8-2 250.51 OK
r-devel-windows-ix86+x86_64 0.8-2 41.00 339.00 380.00 OK
r-patched-linux-x86_64 0.8-2 19.27 168.89 188.16 OK
r-patched-solaris-x86 0.8-2 265.60 OK
r-release-linux-x86_64 0.8-2 18.40 169.28 187.68 OK
r-release-macos-x86_64 0.8-2 OK
r-release-windows-ix86+x86_64 0.8-2 33.00 356.00 389.00 OK
r-oldrel-macos-x86_64 0.8-2 ERROR
r-oldrel-windows-ix86+x86_64 0.8-2 30.00 280.00 310.00 ERROR

Check Details

Version: 0.8-2
Check: R code for possible problems
Result: NOTE
    cbind,Mnumber: no visible global function definition for ‘deparse1’
    rbind,Mnumber: no visible global function definition for ‘deparse1’
    Undefined global functions or variables:
     deparse1
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.8-2
Check: examples
Result: ERROR
    Running examples in ‘Rmpfr-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: log1mexp
    > ### Title: Compute f(a) = log(1 +/- exp(-a)) Numerically Optimally
    > ### Aliases: log1pexp log1mexp
    > ### Keywords: math
    >
    > ### ** Examples
    >
    > fExpr <- expression(
    + DEF = log(1 - exp(-a)),
    + expm1 = log(-expm1(-a)),
    + log1p = log1p(-exp(-a)),
    + F = log1mexp(a))
    > a. <- 2^seq(-58, 10, length = 256)
    > a <- a. ; str(fa <- do.call(cbind, as.list(fExpr)))
     num [1:256, 1:4] -Inf -Inf -Inf -Inf -Inf ...
     - attr(*, "dimnames")=List of 2
     ..$ : NULL
     ..$ : chr [1:4] "DEF" "expm1" "log1p" "F"
    > head(fa)# expm1() works here
     DEF expm1 log1p F
    [1,] -Inf -40.20254 -Inf -40.20254
    [2,] -Inf -40.01770 -Inf -40.01770
    [3,] -Inf -39.83286 -Inf -39.83286
    [4,] -Inf -39.64802 -Inf -39.64802
    [5,] -Inf -39.46318 -Inf -39.46318
    [6,] -Inf -39.27834 -Inf -39.27834
    > tail(fa)# log1p() works here
     DEF expm1 log1p F
    [251,] 0 0 -3.263800e-177 -3.263800e-177
    [252,] 0 0 -4.814940e-213 -4.814940e-213
    [253,] 0 0 -3.774342e-256 -3.774342e-256
    [254,] 0 0 -5.242582e-308 -5.242582e-308
    [255,] 0 0 0.000000e+00 0.000000e+00
    [256,] 0 0 0.000000e+00 0.000000e+00
    >
    > ## graphically:
    > lwd <- 1.5*(5:2); col <- adjustcolor(1:4, 0.4)
    > op <- par(mfcol=c(1,2), mgp = c(1.25, .6, 0), mar = .1+c(3,2,1,1))
    > matplot(a, fa, type = "l", log = "x", col=col, lwd=lwd)
    > legend("topleft", fExpr, col=col, lwd=lwd, lty=1:4, bty="n")
    > # expm1() & log1mexp() work here
    >
    > matplot(a, -fa, type = "l", log = "xy", col=col, lwd=lwd)
    Warning in xy.coords(x, y, xlabel, ylabel, log = log) :
     40 y values <= 0 omitted from logarithmic plot
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     18 y values <= 0 omitted from logarithmic plot
    > legend("left", paste("-",fExpr), col=col, lwd=lwd, lty=1:4, bty="n")
    > # log1p() & log1mexp() work here
    > par(op)
    >
    > aM <- 2^seqMpfr(-58, 10, length=length(a.)) # => default prec = 128
    > a <- aM; dim(faM <- do.call(cbind, as.list(fExpr))) # 256 x 4, "same" as 'fa'
    [1] 256 4
    > ## Here, for small 'a' log1p() and even 'DEF' is still good enough
    > l_f <- asNumeric(log(-faM))
    > all.equal(l_f[,"F"], l_f[,"log1p"], tol=0) # see TRUE (Lnx 64-bit)
    [1] TRUE
    > io <- a. < 80 # for these, the differences are small
    > all.equal(l_f[io,"F"], l_f[io,"expm1"], tol=0) # see 6.662e-9
    [1] "Mean relative difference: 6.622392e-09"
    > all.equal(l_f[io,"F"], l_f[io, "DEF" ], tol=0)
    [1] "Mean relative difference: 6.622392e-09"
    > stopifnot(exprs = {
    + all.equal(l_f[,"F"], l_f[,"log1p"], tol= 1e-15)
    + all.equal(l_f[io,"F"], l_f[io,"expm1"], tol= 1e-7)
    + all.equal(l_f[io,"F"], l_f[io, "DEF" ], tol= 1e-7)
    + })
    > ## For 128-bit prec, if we go down to 2^-130, "log1p" is no longer ok:
    > aM2 <- 2^seqMpfr(-130, 10, by = 1/2)
    > a <- aM2; fa2 <- do.call(cbind, as.list(fExpr))
    > head(asNumeric(fa2), 12)
     DEF expm1 log1p F
     [1,] -Inf -90.10913 -Inf -90.10913
     [2,] -Inf -89.76256 -Inf -89.76256
     [3,] -Inf -89.41599 -Inf -89.41599
     [4,] -88.72284 -89.06941 -88.72284 -89.06941
     [5,] -88.72284 -88.72284 -88.72284 -88.72284
     [6,] -88.72284 -88.37627 -88.72284 -88.37627
     [7,] -88.02969 -88.02969 -88.02969 -88.02969
     [8,] -87.62423 -87.68312 -87.62423 -87.68312
     [9,] -87.33654 -87.33654 -87.33654 -87.33654
    [10,] -86.93108 -86.98997 -86.93108 -86.98997
    [11,] -86.64340 -86.64340 -86.64340 -86.64340
    [12,] -86.32494 -86.29682 -86.32494 -86.29682
    > tail(asNumeric(fa2), 12)
     DEF expm1 log1p F
    [270,] -1.489490e-10 -1.489490e-10 -1.489490e-10 -1.489490e-10
    [271,] -1.266417e-14 -1.266417e-14 -1.266417e-14 -1.266417e-14
    [272,] -2.218581e-20 -2.218581e-20 -2.218581e-20 -2.218581e-20
    [273,] -1.603811e-28 -1.603811e-28 -1.603811e-28 -1.603811e-28
    [274,] 0.000000e+00 0.000000e+00 -4.922102e-40 -4.922102e-40
    [275,] 0.000000e+00 0.000000e+00 -2.572209e-56 -2.572209e-56
    [276,] 0.000000e+00 0.000000e+00 -2.422709e-79 -2.422709e-79
    [277,] 0.000000e+00 0.000000e+00 -6.616261e-112 -6.616261e-112
    [278,] 0.000000e+00 0.000000e+00 -5.869519e-158 -5.869519e-158
    [279,] 0.000000e+00 0.000000e+00 -4.377491e-223 -4.377491e-223
    [280,] 0.000000e+00 0.000000e+00 -3.445126e-315 -3.445126e-315
    [281,] 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
    >
    > matplot(a, log(-fa2[,1:3]) -log(-fa2[,"F"]), type="l", log="x",
    + lty=1:3, lwd=2*(3:1)-1, col=adjustcolor(2:4, 1/3))
    Error in xy.coords(x, y, xlabel, ylabel, log = log) :
     'list' object cannot be coerced to type 'double'
    Calls: matplot -> xy.coords
    Execution halted
Flavor: r-oldrel-macos-x86_64

Version: 0.8-2
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘Rmpfr-pkg.Rnw’
     ...
    [6,] "0.00142857"
    [7,] "0.001428571"
    
    > x <- mpfr(2, 80)^((1:4) * 10000)
    
    > cbind(x)
    
     When sourcing ‘Rmpfr-pkg.R’:
    Error: could not find function "deparse1"
    Execution halted
    
     ‘Maechler_useR_2011-abstr.Rnw’using ‘UTF-8’... [1s/1s] OK
     ‘Rmpfr-pkg.Rnw’using ‘UTF-8’... failed
     ‘log1mexp-note.Rnw’using ‘UTF-8’... [4s/4s] OK
Flavor: r-oldrel-macos-x86_64

Version: 0.8-2
Check: re-building of vignette outputs
Result: NOTE
    Error(s) in re-building vignettes:
    --- re-building ‘Maechler_useR_2011-abstr.Rnw’ using Sweave
    Loading required package: Rmpfr
    Loading required package: gmp
    
    Attaching package: ‘gmp’
    
    The following objects are masked from ‘package:base’:
    
     %*%, apply, crossprod, matrix, tcrossprod
    
    C code of R package 'Rmpfr': GMP using 64 bits per limb
    
    
    Attaching package: ‘Rmpfr’
    
    The following object is masked from ‘package:gmp’:
    
     outer
    
    The following objects are masked from ‘package:stats’:
    
     dbinom, dgamma, dnbinom, dnorm, dpois, pnorm
    
    The following objects are masked from ‘package:base’:
    
     cbind, pmax, pmin, rbind
    
    --- finished re-building ‘Maechler_useR_2011-abstr.Rnw’
    
    --- re-building ‘Rmpfr-pkg.Rnw’ using Sweave
    Loading required package: sfsmisc
    Loading required package: Rmpfr
    Loading required package: gmp
    
    Attaching package: ‘gmp’
    
    The following objects are masked from ‘package:sfsmisc’:
    
     factorize, is.whole
    
    The following objects are masked from ‘package:base’:
    
     %*%, apply, crossprod, matrix, tcrossprod
    
    C code of R package 'Rmpfr': GMP using 64 bits per limb
    
    
    Attaching package: ‘Rmpfr’
    
    The following object is masked from ‘package:gmp’:
    
     outer
    
    The following objects are masked from ‘package:stats’:
    
     dbinom, dgamma, dnbinom, dnorm, dpois, pnorm
    
    The following objects are masked from ‘package:base’:
    
     cbind, pmax, pmin, rbind
    
    
    Error: processing vignette 'Rmpfr-pkg.Rnw' failed with diagnostics:
     chunk 23 (label = format-lrg)
    Error in deparse1(a) : could not find function "deparse1"
    
    --- failed re-building ‘Rmpfr-pkg.Rnw’
    
    --- re-building ‘log1mexp-note.Rnw’ using Sweave
    Loading required package: gmp
    
    Attaching package: `gmp'
    
    The following objects are masked from `package:sfsmisc':
    
     factorize, is.whole
    
    The following objects are masked from `package:base':
    
     %*%, apply, crossprod, matrix, tcrossprod
    
    C code of R package 'Rmpfr': GMP using 64 bits per limb
    
    
    Attaching package: `Rmpfr'
    
    The following object is masked from `package:gmp':
    
     outer
    
    The following objects are masked from `package:stats':
    
     dbinom, dgamma, dnbinom, dnorm, dpois, pnorm
    
    The following objects are masked from `package:base':
    
     cbind, pmax, pmin, rbind
    
    --- finished re-building ‘log1mexp-note.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘Rmpfr-pkg.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-macos-x86_64

Version: 0.8-2
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'Rmpfr-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: log1mexp
    > ### Title: Compute f(a) = log(1 +/- exp(-a)) Numerically Optimally
    > ### Aliases: log1pexp log1mexp
    > ### Keywords: math
    >
    > ### ** Examples
    >
    > fExpr <- expression(
    + DEF = log(1 - exp(-a)),
    + expm1 = log(-expm1(-a)),
    + log1p = log1p(-exp(-a)),
    + F = log1mexp(a))
    > a. <- 2^seq(-58, 10, length = 256)
    > a <- a. ; str(fa <- do.call(cbind, as.list(fExpr)))
     num [1:256, 1:4] -Inf -Inf -Inf -Inf -Inf ...
     - attr(*, "dimnames")=List of 2
     ..$ : NULL
     ..$ : chr [1:4] "DEF" "expm1" "log1p" "F"
    > head(fa)# expm1() works here
     DEF expm1 log1p F
    [1,] -Inf -40.20254 -Inf -40.20254
    [2,] -Inf -40.01770 -Inf -40.01770
    [3,] -Inf -39.83286 -Inf -39.83286
    [4,] -Inf -39.64802 -Inf -39.64802
    [5,] -Inf -39.46318 -Inf -39.46318
    [6,] -Inf -39.27834 -Inf -39.27834
    > tail(fa)# log1p() works here
     DEF expm1 log1p F
    [251,] 0 0 -3.263800e-177 -3.263800e-177
    [252,] 0 0 -4.814940e-213 -4.814940e-213
    [253,] 0 0 -3.774342e-256 -3.774342e-256
    [254,] 0 0 -5.242582e-308 -5.242582e-308
    [255,] 0 0 0.000000e+00 0.000000e+00
    [256,] 0 0 0.000000e+00 0.000000e+00
    >
    > ## graphically:
    > lwd <- 1.5*(5:2); col <- adjustcolor(1:4, 0.4)
    > op <- par(mfcol=c(1,2), mgp = c(1.25, .6, 0), mar = .1+c(3,2,1,1))
    > matplot(a, fa, type = "l", log = "x", col=col, lwd=lwd)
    > legend("topleft", fExpr, col=col, lwd=lwd, lty=1:4, bty="n")
    > # expm1() & log1mexp() work here
    >
    > matplot(a, -fa, type = "l", log = "xy", col=col, lwd=lwd)
    Warning in xy.coords(x, y, xlabel, ylabel, log = log) :
     40 y values <= 0 omitted from logarithmic plot
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     18 y values <= 0 omitted from logarithmic plot
    > legend("left", paste("-",fExpr), col=col, lwd=lwd, lty=1:4, bty="n")
    > # log1p() & log1mexp() work here
    > par(op)
    >
    > aM <- 2^seqMpfr(-58, 10, length=length(a.)) # => default prec = 128
    > a <- aM; dim(faM <- do.call(cbind, as.list(fExpr))) # 256 x 4, "same" as 'fa'
    [1] 256 4
    > ## Here, for small 'a' log1p() and even 'DEF' is still good enough
    > l_f <- asNumeric(log(-faM))
    > all.equal(l_f[,"F"], l_f[,"log1p"], tol=0) # see TRUE (Lnx 64-bit)
    [1] TRUE
    > io <- a. < 80 # for these, the differences are small
    > all.equal(l_f[io,"F"], l_f[io,"expm1"], tol=0) # see 6.662e-9
    [1] "Mean relative difference: 6.622392e-09"
    > all.equal(l_f[io,"F"], l_f[io, "DEF" ], tol=0)
    [1] "Mean relative difference: 6.622392e-09"
    > stopifnot(exprs = {
    + all.equal(l_f[,"F"], l_f[,"log1p"], tol= 1e-15)
    + all.equal(l_f[io,"F"], l_f[io,"expm1"], tol= 1e-7)
    + all.equal(l_f[io,"F"], l_f[io, "DEF" ], tol= 1e-7)
    + })
    > ## For 128-bit prec, if we go down to 2^-130, "log1p" is no longer ok:
    > aM2 <- 2^seqMpfr(-130, 10, by = 1/2)
    > a <- aM2; fa2 <- do.call(cbind, as.list(fExpr))
    > head(asNumeric(fa2), 12)
     DEF expm1 log1p F
     [1,] -Inf -90.10913 -Inf -90.10913
     [2,] -Inf -89.76256 -Inf -89.76256
     [3,] -Inf -89.41599 -Inf -89.41599
     [4,] -88.72284 -89.06941 -88.72284 -89.06941
     [5,] -88.72284 -88.72284 -88.72284 -88.72284
     [6,] -88.72284 -88.37627 -88.72284 -88.37627
     [7,] -88.02969 -88.02969 -88.02969 -88.02969
     [8,] -87.62423 -87.68312 -87.62423 -87.68312
     [9,] -87.33654 -87.33654 -87.33654 -87.33654
    [10,] -86.93108 -86.98997 -86.93108 -86.98997
    [11,] -86.64340 -86.64340 -86.64340 -86.64340
    [12,] -86.32494 -86.29682 -86.32494 -86.29682
    > tail(asNumeric(fa2), 12)
     DEF expm1 log1p F
    [270,] -1.489490e-10 -1.489490e-10 -1.489490e-10 -1.489490e-10
    [271,] -1.266417e-14 -1.266417e-14 -1.266417e-14 -1.266417e-14
    [272,] -2.218581e-20 -2.218581e-20 -2.218581e-20 -2.218581e-20
    [273,] -1.603811e-28 -1.603811e-28 -1.603811e-28 -1.603811e-28
    [274,] 0.000000e+00 0.000000e+00 -4.922102e-40 -4.922102e-40
    [275,] 0.000000e+00 0.000000e+00 -2.572209e-56 -2.572209e-56
    [276,] 0.000000e+00 0.000000e+00 -2.422709e-79 -2.422709e-79
    [277,] 0.000000e+00 0.000000e+00 -6.616261e-112 -6.616261e-112
    [278,] 0.000000e+00 0.000000e+00 -5.869519e-158 -5.869519e-158
    [279,] 0.000000e+00 0.000000e+00 -4.377491e-223 -4.377491e-223
    [280,] 0.000000e+00 0.000000e+00 -3.445126e-315 -3.445126e-315
    [281,] 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
    >
    > matplot(a, log(-fa2[,1:3]) -log(-fa2[,"F"]), type="l", log="x",
    + lty=1:3, lwd=2*(3:1)-1, col=adjustcolor(2:4, 1/3))
    Error in xy.coords(x, y, xlabel, ylabel, log = log) :
     'list' object cannot be coerced to type 'double'
    Calls: matplot -> xy.coords
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.8-2
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'Rmpfr-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: log1mexp
    > ### Title: Compute f(a) = log(1 +/- exp(-a)) Numerically Optimally
    > ### Aliases: log1pexp log1mexp
    > ### Keywords: math
    >
    > ### ** Examples
    >
    > fExpr <- expression(
    + DEF = log(1 - exp(-a)),
    + expm1 = log(-expm1(-a)),
    + log1p = log1p(-exp(-a)),
    + F = log1mexp(a))
    > a. <- 2^seq(-58, 10, length = 256)
    > a <- a. ; str(fa <- do.call(cbind, as.list(fExpr)))
     num [1:256, 1:4] -Inf -Inf -Inf -Inf -Inf ...
     - attr(*, "dimnames")=List of 2
     ..$ : NULL
     ..$ : chr [1:4] "DEF" "expm1" "log1p" "F"
    > head(fa)# expm1() works here
     DEF expm1 log1p F
    [1,] -Inf -40.20254 -Inf -40.20254
    [2,] -Inf -40.01770 -Inf -40.01770
    [3,] -Inf -39.83286 -Inf -39.83286
    [4,] -Inf -39.64802 -Inf -39.64802
    [5,] -Inf -39.46318 -Inf -39.46318
    [6,] -Inf -39.27834 -Inf -39.27834
    > tail(fa)# log1p() works here
     DEF expm1 log1p F
    [251,] 0 0 -3.263800e-177 -3.263800e-177
    [252,] 0 0 -4.814940e-213 -4.814940e-213
    [253,] 0 0 -3.774342e-256 -3.774342e-256
    [254,] 0 0 -5.242582e-308 -5.242582e-308
    [255,] 0 0 0.000000e+00 0.000000e+00
    [256,] 0 0 0.000000e+00 0.000000e+00
    >
    > ## graphically:
    > lwd <- 1.5*(5:2); col <- adjustcolor(1:4, 0.4)
    > op <- par(mfcol=c(1,2), mgp = c(1.25, .6, 0), mar = .1+c(3,2,1,1))
    > matplot(a, fa, type = "l", log = "x", col=col, lwd=lwd)
    > legend("topleft", fExpr, col=col, lwd=lwd, lty=1:4, bty="n")
    > # expm1() & log1mexp() work here
    >
    > matplot(a, -fa, type = "l", log = "xy", col=col, lwd=lwd)
    Warning in xy.coords(x, y, xlabel, ylabel, log = log) :
     40 y values <= 0 omitted from logarithmic plot
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     18 y values <= 0 omitted from logarithmic plot
    > legend("left", paste("-",fExpr), col=col, lwd=lwd, lty=1:4, bty="n")
    > # log1p() & log1mexp() work here
    > par(op)
    >
    > aM <- 2^seqMpfr(-58, 10, length=length(a.)) # => default prec = 128
    > a <- aM; dim(faM <- do.call(cbind, as.list(fExpr))) # 256 x 4, "same" as 'fa'
    [1] 256 4
    > ## Here, for small 'a' log1p() and even 'DEF' is still good enough
    > l_f <- asNumeric(log(-faM))
    > all.equal(l_f[,"F"], l_f[,"log1p"], tol=0) # see TRUE (Lnx 64-bit)
    [1] TRUE
    > io <- a. < 80 # for these, the differences are small
    > all.equal(l_f[io,"F"], l_f[io,"expm1"], tol=0) # see 6.662e-9
    [1] "Mean relative difference: 6.622392e-09"
    > all.equal(l_f[io,"F"], l_f[io, "DEF" ], tol=0)
    [1] "Mean relative difference: 6.622392e-09"
    > stopifnot(exprs = {
    + all.equal(l_f[,"F"], l_f[,"log1p"], tol= 1e-15)
    + all.equal(l_f[io,"F"], l_f[io,"expm1"], tol= 1e-7)
    + all.equal(l_f[io,"F"], l_f[io, "DEF" ], tol= 1e-7)
    + })
    > ## For 128-bit prec, if we go down to 2^-130, "log1p" is no longer ok:
    > aM2 <- 2^seqMpfr(-130, 10, by = 1/2)
    > a <- aM2; fa2 <- do.call(cbind, as.list(fExpr))
    > head(asNumeric(fa2), 12)
     DEF expm1 log1p F
     [1,] -Inf -90.10913 -Inf -90.10913
     [2,] -Inf -89.76256 -Inf -89.76256
     [3,] -Inf -89.41599 -Inf -89.41599
     [4,] -88.72284 -89.06941 -88.72284 -89.06941
     [5,] -88.72284 -88.72284 -88.72284 -88.72284
     [6,] -88.72284 -88.37627 -88.72284 -88.37627
     [7,] -88.02969 -88.02969 -88.02969 -88.02969
     [8,] -87.62423 -87.68312 -87.62423 -87.68312
     [9,] -87.33654 -87.33654 -87.33654 -87.33654
    [10,] -86.93108 -86.98997 -86.93108 -86.98997
    [11,] -86.64340 -86.64340 -86.64340 -86.64340
    [12,] -86.32494 -86.29682 -86.32494 -86.29682
    > tail(asNumeric(fa2), 12)
     DEF expm1 log1p F
    [270,] -1.489490e-10 -1.489490e-10 -1.489490e-10 -1.489490e-10
    [271,] -1.266417e-14 -1.266417e-14 -1.266417e-14 -1.266417e-14
    [272,] -2.218581e-20 -2.218581e-20 -2.218581e-20 -2.218581e-20
    [273,] -1.603811e-28 -1.603811e-28 -1.603811e-28 -1.603811e-28
    [274,] 0.000000e+00 0.000000e+00 -4.922102e-40 -4.922102e-40
    [275,] 0.000000e+00 0.000000e+00 -2.572209e-56 -2.572209e-56
    [276,] 0.000000e+00 0.000000e+00 -2.422709e-79 -2.422709e-79
    [277,] 0.000000e+00 0.000000e+00 -6.616261e-112 -6.616261e-112
    [278,] 0.000000e+00 0.000000e+00 -5.869519e-158 -5.869519e-158
    [279,] 0.000000e+00 0.000000e+00 -4.377491e-223 -4.377491e-223
    [280,] 0.000000e+00 0.000000e+00 -3.445126e-315 -3.445126e-315
    [281,] 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
    >
    > matplot(a, log(-fa2[,1:3]) -log(-fa2[,"F"]), type="l", log="x",
    + lty=1:3, lwd=2*(3:1)-1, col=adjustcolor(2:4, 1/3))
    Error in xy.coords(x, y, xlabel, ylabel, log = log) :
     'list' object cannot be coerced to type 'double'
    Calls: matplot -> xy.coords
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.8-2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'Maechler_useR_2011-abstr.Rnw' using Sweave
    Loading required package: Rmpfr
    Loading required package: gmp
    
    Attaching package: 'gmp'
    
    The following objects are masked from 'package:base':
    
     %*%, apply, crossprod, matrix, tcrossprod
    
    C code of R package 'Rmpfr': GMP using 64 bits per limb
    
    
    Attaching package: 'Rmpfr'
    
    The following object is masked from 'package:gmp':
    
     outer
    
    The following objects are masked from 'package:stats':
    
     dbinom, dgamma, dnbinom, dnorm, dpois, pnorm
    
    The following objects are masked from 'package:base':
    
     cbind, pmax, pmin, rbind
    
    --- finished re-building 'Maechler_useR_2011-abstr.Rnw'
    
    --- re-building 'Rmpfr-pkg.Rnw' using Sweave
    Loading required package: sfsmisc
    Loading required package: Rmpfr
    Loading required package: gmp
    
    Attaching package: 'gmp'
    
    The following objects are masked from 'package:sfsmisc':
    
     factorize, is.whole
    
    The following objects are masked from 'package:base':
    
     %*%, apply, crossprod, matrix, tcrossprod
    
    C code of R package 'Rmpfr': GMP using 64 bits per limb
    
    
    Attaching package: 'Rmpfr'
    
    The following object is masked from 'package:gmp':
    
     outer
    
    The following objects are masked from 'package:stats':
    
     dbinom, dgamma, dnbinom, dnorm, dpois, pnorm
    
    The following objects are masked from 'package:base':
    
     cbind, pmax, pmin, rbind
    
    
    Error: processing vignette 'Rmpfr-pkg.Rnw' failed with diagnostics:
     chunk 23 (label = format-lrg)
    Error in deparse1(a) : could not find function "deparse1"
    
    --- failed re-building 'Rmpfr-pkg.Rnw'
    
    --- re-building 'log1mexp-note.Rnw' using Sweave
    Loading required package: gmp
    
    Attaching package: `gmp'
    
    The following objects are masked from `package:sfsmisc':
    
     factorize, is.whole
    
    The following objects are masked from `package:base':
    
     %*%, apply, crossprod, matrix, tcrossprod
    
    C code of R package 'Rmpfr': GMP using 64 bits per limb
    
    
    Attaching package: `Rmpfr'
    
    The following object is masked from `package:gmp':
    
     outer
    
    The following objects are masked from `package:stats':
    
     dbinom, dgamma, dnbinom, dnorm, dpois, pnorm
    
    The following objects are masked from `package:base':
    
     cbind, pmax, pmin, rbind
    
    !!! Error: Too many files!
    PDFCROP 1.38, 2012/11/02 - Copyright (c) 2002-2012 by Heiko Oberdiek.
    !!! Error: Too many files!
    PDFCROP 1.38, 2012/11/02 - Copyright (c) 2002-2012 by Heiko Oberdiek.
    !!! Error: Too many files!
    PDFCROP 1.38, 2012/11/02 - Copyright (c) 2002-2012 by Heiko Oberdiek.
    !!! Error: Too many files!
    PDFCROP 1.38, 2012/11/02 - Copyright (c) 2002-2012 by Heiko Oberdiek.
    --- finished re-building 'log1mexp-note.Rnw'
    
    SUMMARY: processing the following file failed:
     'Rmpfr-pkg.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64