CRAN Package Check Results for Package PeakError

Last updated on 2020-12-04 00:48:29 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2017.06.19 2.70 24.92 27.62 OK
r-devel-linux-x86_64-debian-gcc 2017.06.19 2.13 20.00 22.13 OK
r-devel-linux-x86_64-fedora-clang 2017.06.19 42.53 OK
r-devel-linux-x86_64-fedora-gcc 2017.06.19 33.08 OK
r-devel-windows-ix86+x86_64 2017.06.19 7.00 50.00 57.00 ERROR
r-patched-linux-x86_64 2017.06.19 2.53 26.24 28.77 OK
r-patched-solaris-x86 2017.06.19 49.40 OK
r-release-linux-x86_64 2017.06.19 2.36 25.68 28.04 OK
r-release-macos-x86_64 2017.06.19 OK
r-release-windows-ix86+x86_64 2017.06.19 6.00 42.00 48.00 ERROR
r-oldrel-macos-x86_64 2017.06.19 OK
r-oldrel-windows-ix86+x86_64 2017.06.19 6.00 52.00 58.00 OK

Check Details

Version: 2017.06.19
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'script.R' [1s]
     Running 'testthat.R' [2s]
    Running the tests in 'tests/script.R' failed.
    Complete output:
     > ## I initially tried writing these tests using testthat, but I got
     > ## errors when using the system() and system2() functions (bug in
     > ## testthat).
     > PeakError_compute.R <- system.file(
     + "exampleData", "PeakError_compute.R",
     + mustWork=TRUE,
     + package="PeakError")
     > Rscript <- R.home(file.path("bin", "Rscript"))
     > exampleData <- system.file("exampleData", package="PeakError", mustWork=TRUE)
     > peaks.bed <- file.path(exampleData, "peaks.bed")
     > labels.bed <- file.path(exampleData, "labels.bed")
     > overlapping.bed <- file.path(exampleData, "overlapping_peaks.bed")
     >
     > ##test_that("PeakError_compute.R correct", {
     > out.file <- tempfile()
     > cmd <- paste(Rscript, PeakError_compute.R, peaks.bed, labels.bed, ">", out.file)
     > status <- system(cmd)
     Error: Usage: compute_error.R peaks.bed labels.bed > errors.bed
     Execution halted
     > errors <- read.table(out.file, sep="\t", header=TRUE)
     Error in file(file, "rt") : cannot open the connection
     Calls: read.table -> file
     In addition: Warning message:
     In file(file, "rt") :
     cannot open file 'D:\temp\RtmpwBPzQd\file25bc417a613c': No such file or directory
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 2017.06.19
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'script.R' [1s]
     Running 'testthat.R' [2s]
    Running the tests in 'tests/script.R' failed.
    Complete output:
     > ## I initially tried writing these tests using testthat, but I got
     > ## errors when using the system() and system2() functions (bug in
     > ## testthat).
     > PeakError_compute.R <- system.file(
     + "exampleData", "PeakError_compute.R",
     + mustWork=TRUE,
     + package="PeakError")
     > Rscript <- R.home(file.path("bin", "Rscript"))
     > exampleData <- system.file("exampleData", package="PeakError", mustWork=TRUE)
     > peaks.bed <- file.path(exampleData, "peaks.bed")
     > labels.bed <- file.path(exampleData, "labels.bed")
     > overlapping.bed <- file.path(exampleData, "overlapping_peaks.bed")
     >
     > ##test_that("PeakError_compute.R correct", {
     > out.file <- tempfile()
     > cmd <- paste(Rscript, PeakError_compute.R, peaks.bed, labels.bed, ">", out.file)
     > status <- system(cmd)
     Error: Usage: compute_error.R peaks.bed labels.bed > errors.bed
     Execution halted
     > errors <- read.table(out.file, sep="\t", header=TRUE)
     Error in file(file, "rt") : cannot open the connection
     Calls: read.table -> file
     In addition: Warning message:
     In file(file, "rt") :
     cannot open file 'D:\temp\RtmpGMRQam\file2093051dc25c9': No such file or directory
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 2017.06.19
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'script.R' [1s]
     Running 'testthat.R' [2s]
    Running the tests in 'tests/script.R' failed.
    Complete output:
     > ## I initially tried writing these tests using testthat, but I got
     > ## errors when using the system() and system2() functions (bug in
     > ## testthat).
     > PeakError_compute.R <- system.file(
     + "exampleData", "PeakError_compute.R",
     + mustWork=TRUE,
     + package="PeakError")
     > Rscript <- R.home(file.path("bin", "Rscript"))
     > exampleData <- system.file("exampleData", package="PeakError", mustWork=TRUE)
     > peaks.bed <- file.path(exampleData, "peaks.bed")
     > labels.bed <- file.path(exampleData, "labels.bed")
     > overlapping.bed <- file.path(exampleData, "overlapping_peaks.bed")
     >
     > ##test_that("PeakError_compute.R correct", {
     > out.file <- tempfile()
     > cmd <- paste(Rscript, PeakError_compute.R, peaks.bed, labels.bed, ">", out.file)
     > status <- system(cmd)
     Error: Usage: compute_error.R peaks.bed labels.bed > errors.bed
     Execution halted
     > errors <- read.table(out.file, sep="\t", header=TRUE)
     Error in file(file, "rt") : cannot open the connection
     Calls: read.table -> file
     In addition: Warning message:
     In file(file, "rt") :
     cannot open file 'D:\temp\RtmpeiyDY9\file1082cfe354c6': No such file or directory
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 2017.06.19
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'script.R' [1s]
     Running 'testthat.R' [2s]
    Running the tests in 'tests/script.R' failed.
    Complete output:
     > ## I initially tried writing these tests using testthat, but I got
     > ## errors when using the system() and system2() functions (bug in
     > ## testthat).
     > PeakError_compute.R <- system.file(
     + "exampleData", "PeakError_compute.R",
     + mustWork=TRUE,
     + package="PeakError")
     > Rscript <- R.home(file.path("bin", "Rscript"))
     > exampleData <- system.file("exampleData", package="PeakError", mustWork=TRUE)
     > peaks.bed <- file.path(exampleData, "peaks.bed")
     > labels.bed <- file.path(exampleData, "labels.bed")
     > overlapping.bed <- file.path(exampleData, "overlapping_peaks.bed")
     >
     > ##test_that("PeakError_compute.R correct", {
     > out.file <- tempfile()
     > cmd <- paste(Rscript, PeakError_compute.R, peaks.bed, labels.bed, ">", out.file)
     > status <- system(cmd)
     Error: Usage: compute_error.R peaks.bed labels.bed > errors.bed
     Execution halted
     > errors <- read.table(out.file, sep="\t", header=TRUE)
     Error in file(file, "rt") : cannot open the connection
     Calls: read.table -> file
     In addition: Warning message:
     In file(file, "rt") :
     cannot open file 'D:\temp\Rtmp2pVSxC\file28ca4397a5bce': No such file or directory
     Execution halted
Flavor: r-release-windows-ix86+x86_64