tigger: R Tools for Inferring New Immunoglobulin Alleles from Rep-Seq Data

Infers the V genotype of an individual from immunoglobulin (Ig) repertoire-sequencing (Rep-Seq) data, including detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences.

Version: 0.2.7
Depends: R (≥ 3.2.5), alakazam (≥ 0.2.1), shazam (≥ 0.1.2), ggplot2 (≥ 2.0.0)
Imports: tidyr, dplyr (≥ 0.5.0), doParallel, foreach, graphics, grid, iterators, parallel, stats
Suggests: knitr
Published: 2016-07-25
Author: Daniel Gadala-Maria [aut, cre], Jason Vander Heiden [ctb], Steven Kleinstein [aut, cph]
Maintainer: Daniel Gadala-Maria <daniel.gadala-maria at yale.edu>
BugReports: https://bitbucket.org/kleinstein/tigger/issues
License: CC BY-NC-SA 4.0
URL: http://tigger.readthedocs.io
NeedsCompilation: no
Citation: tigger citation info
Materials: README NEWS
CRAN checks: tigger results


Reference manual: tigger.pdf
Vignettes: Polymorphism detection and genotyping
Package source: tigger_0.2.7.tar.gz
Windows binaries: r-devel: tigger_0.2.7.zip, r-release: tigger_0.2.7.zip, r-oldrel: tigger_0.2.7.zip
OS X Mavericks binaries: r-release: tigger_0.2.7.tgz, r-oldrel: tigger_0.2.7.tgz
Old sources: tigger archive