protViz: Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

This R package helps with quality checks, visualizations and analysis of mass spectrometry data, coming from proteomics experiments. The package is developed, tested and used at the Functional Genomics Center Zurich. We use this package mainly for prototyping, teaching, and having fun with proteomics data. But it can also be used to do data analysis for small scale data sets.

Version: 0.2.15
Depends: R (≥ 3.3), methods
Imports: Rcpp (≥ 0.12.4)
Suggests: lattice, RUnit, BiocGenerics
Published: 2016-05-14
Author: Christian Panse, Jonas Grossmann, Simon Barkow-Oesterreicher
Maintainer: Christian Panse <cp at>
License: GPL-3
NeedsCompilation: yes
Citation: protViz citation info
Materials: README NEWS
CRAN checks: protViz results


Reference manual: protViz.pdf
Vignettes: Howto find putative PTM (pPTM) Marker Ion?
protViz primer
Package source: protViz_0.2.15.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Mavericks binaries: r-release: protViz_0.2.15.tgz, r-oldrel: protViz_0.2.9.tgz
Old sources: protViz archive