Routines for PLS-based genomic analyses, implementing PLS methods for classification with microarray data and prediction of transcription factor activities from combined ChIP-chip analysis. The >=1.2-1 versions include two new classification methods for microarray data: GSIM and Ridge PLS. The >=1.3 versions includes a new classification method combining variable selection and compression in logistic regression context: RIRLS-SPLS; and an adaptive version of the sparse PLS.
| Version: | 1.3-1 |
| Depends: | R (≥ 3.0), MASS, boot, parallel |
| Published: | 2015-05-11 |
| Author: | Anne-Laure Boulesteix, Ghislain Durif, Sophie Lambert-Lacroix, Julie Peyre, and Korbinian Strimmer. |
| Maintainer: | Ghislain Durif <ghislain.durif at univ-lyon1.fr> |
| BugReports: | NA |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | http://cran.r-project.org/web/packages/plsgenomics/index.html |
| NeedsCompilation: | no |
| Materials: | README |
| In views: | Multivariate |
| CRAN checks: | plsgenomics results |
| Reference manual: | plsgenomics.pdf |
| Package source: | plsgenomics_1.3-1.tar.gz |
| Windows binaries: | r-devel: plsgenomics_1.3-1.zip, r-release: plsgenomics_1.3-1.zip, r-oldrel: plsgenomics_1.3-1.zip |
| OS X Mavericks binaries: | r-release: plsgenomics_1.3-1.tgz, r-oldrel: plsgenomics_1.3-1.tgz |
| Old sources: | plsgenomics archive |
| Reverse depends: | KODAMA, MAclinical |
| Reverse suggests: | musicNMR, PLSbiplot1 |