biomartr: Functional Annotation and Biological Data Retrieval with R

Perform biological data retrieval and functional annotation with R. This tool provides API functions to the BioMart database and genome retrieval functions for bulk retrieval of genomes.

Version: 0.0.3
Depends: R (≥ 3.1.1)
Imports: biomaRt, Biostrings, data.table (≥ 1.9.4), dplyr (≥ 0.3.0), readr (≥ 0.2.2), downloader (≥ 0.3), RCurl (≥ 1.95-4.5), XML (≥ 3.98-1.1), httr (≥ 0.6.1), stringr (≥ 0.6.2)
Suggests: knitr (≥ 1.6), rmarkdown (≥ 0.3.3), devtools (≥ 1.6.1), testthat
Published: 2016-03-02
Author: Hajk-Georg Drost
Maintainer: Hajk-Georg Drost <hgd23 at>
License: GPL-3
NeedsCompilation: yes
Materials: README NEWS
CRAN checks: biomartr results


Reference manual: biomartr.pdf
Vignettes: NCBI Database Retrieval
Functional Annotation
Phylotranscriptomics using biomartr
Sequence Retrieval
Package source: biomartr_0.0.3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Mavericks binaries: r-release: biomartr_0.0.3.tgz, r-oldrel: biomartr_0.0.3.tgz
Old sources: biomartr archive