Perform biological data retrieval and functional annotation with R. This tool provides API functions to the BioMart database and genome retrieval functions for bulk retrieval of genomes.
| Version: | 0.0.3 |
| Depends: | R (≥ 3.1.1) |
| Imports: | biomaRt, Biostrings, data.table (≥ 1.9.4), dplyr (≥ 0.3.0), readr (≥ 0.2.2), downloader (≥ 0.3), RCurl (≥ 1.95-4.5), XML (≥ 3.98-1.1), httr (≥ 0.6.1), stringr (≥ 0.6.2) |
| Suggests: | knitr (≥ 1.6), rmarkdown (≥ 0.3.3), devtools (≥ 1.6.1), testthat |
| Published: | 2016-03-02 |
| Author: | Hajk-Georg Drost |
| Maintainer: | Hajk-Georg Drost <hgd23 at cam.ac.uk> |
| BugReports: | https://github.com/HajkD/biomartr/issues |
| License: | GPL-3 |
| URL: | https://github.com/HajkD/biomartr |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | biomartr results |
| Reference manual: | biomartr.pdf |
| Vignettes: |
NCBI Database Retrieval Functional Annotation Introduction Phylotranscriptomics using biomartr Sequence Retrieval |
| Package source: | biomartr_0.0.3.tar.gz |
| Windows binaries: | r-devel: biomartr_0.0.3.zip, r-release: biomartr_0.0.3.zip, r-oldrel: biomartr_0.0.3.zip |
| OS X Mavericks binaries: | r-release: biomartr_0.0.3.tgz, r-oldrel: biomartr_0.0.3.tgz |
| Old sources: | biomartr archive |