Implements tools for building and visualising admixture graphs and for extracting equations from them. These equations can be compared to f- statistics obtained from data to test the consistency of a graph against data – for example by comparing the sign of f_4-statistics with the signs predicted by the graph – and graph parameters (edge lengths and admixture proportions) can be fitted to observed statistics.

Version: | 1.0.0 |

Depends: | R (≥ 3.2.2) |

Imports: | doParallel, dplyr, foreach, ggplot2, graphics, MASS, neldermead, parallel, pracma, stats, utils |

Suggests: | knitr, testthat |

Published: | 2016-06-10 |

Author: | Thomas Mailund [cre, aut], Kalle Leppala [aut] |

Maintainer: | Thomas Mailund <mailund at birc.au.dk> |

BugReports: | https://github.com/mailund/admixture_graph/issues |

License: | GPL-2 |

URL: | https://github.com/mailund/admixture_graph |

NeedsCompilation: | no |

Materials: | README |

CRAN checks: | admixturegraph results |

Reference manual: | admixturegraph.pdf |

Vignettes: |
Constructing and fitting admixture graphs to D statistics |

Package source: | admixturegraph_1.0.0.tar.gz |

Windows binaries: | r-devel: admixturegraph_1.0.0.zip, r-release: admixturegraph_1.0.0.zip, r-oldrel: admixturegraph_1.0.0.zip |

OS X Mavericks binaries: | r-release: admixturegraph_1.0.0.tgz, r-oldrel: admixturegraph_1.0.0.tgz |