timeSeq: Detecting Differentially Expressed Genes in Time Course RNA-Seq Data

Uses a negative binomial mixed-effects (NBME) model to detect nonparallel differential expression(NPDE) genes and parallel differential expression(PDE) genes in the time course RNA-seq data.

Version: 1.0.1
Depends: R (≥ 3.0.1)
Imports: parallel, gss, lattice, pheatmap, doParallel, foreach, reshape, edgeR, grDevices, graphics
Suggests: knitr
Published: 2015-09-25
Author: Fan Gao, Xiaoxiao Sun
Maintainer: Fan Gao <fangaohz at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: timeSeq results


Reference manual: timeSeq.pdf
Vignettes: Inferring differential expressed genes in time course RNA-Seq data with the timeSeq package
Package source: timeSeq_1.0.1.tar.gz
Windows binaries: r-devel: timeSeq_1.0.1.zip, r-release: timeSeq_1.0.1.zip, r-oldrel: timeSeq_1.0.1.zip
OS X Snow Leopard binaries: r-release: not available, r-oldrel: timeSeq_1.0.0.tgz
OS X Mavericks binaries: r-release: timeSeq_1.0.1.tgz
Old sources: timeSeq archive