Uses a negative binomial mixed-effects (NBME) model to detect nonparallel differential expression(NPDE) genes and parallel differential expression(PDE) genes in the time course RNA-seq data.
| Version: |
1.0.1 |
| Depends: |
R (≥ 3.0.1) |
| Imports: |
parallel, gss, lattice, pheatmap, doParallel, foreach, reshape, edgeR, grDevices, graphics |
| Suggests: |
knitr |
| Published: |
2015-09-25 |
| Author: |
Fan Gao, Xiaoxiao Sun |
| Maintainer: |
Fan Gao <fangaohz at gmail.com> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
no |
| CRAN checks: |
timeSeq results |