scrm: Simulating the Evolution of Biological Sequences

A coalescent simulator that allows the rapid simulation of biological sequences under neutral models of evolution. Different to other coalescent based simulations, it has an optional approximation parameter that allows for high accuracy while maintaining a linear run time cost for long sequences. It is optimized for simulating massive data sets as produced by Next-Generation Sequencing technologies for up to several thousand sequences.

Version: 1.6.0-2
Depends: R (≥ 3.1.0)
Imports: Rcpp (≥ 0.11.2)
LinkingTo: Rcpp
Suggests: testthat (≥ 0.9.0), knitr, ape
Published: 2015-06-07
Author: Paul Staab [aut, cre, cph], Zhu Sha [aut, cph], Dirk Metzler [aut, cph, ths], Gerton Lunter [aut, cph, ths]
Maintainer: Paul Staab <develop at>
License: GPL (≥ 3)
NeedsCompilation: yes
SystemRequirements: C++11
Citation: scrm citation info
Materials: README NEWS
CRAN checks: scrm results


Reference manual: scrm.pdf
Vignettes: scrm-Arguments
Package source: scrm_1.6.0-2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: not available, r-oldrel: not available
OS X Mavericks binaries: r-release: scrm_1.6.0-2.tgz
Old sources: scrm archive

Reverse dependencies:

Reverse imports: coala