An interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree for all named species.
| Version: | 0.5.0 |
| Depends: | R (≥ 3.1.1) |
| Imports: | httr, jsonlite, assertthat, rncl (≥ 0.6.0), ape |
| Suggests: | knitr (≥ 1.12), rmarkdown (≥ 0.7), testthat, RNeXML, phylobase, gdata (≥ 2.17.0), MCMCglmm, fulltext (≥ 0.1.6) |
| Published: | 2016-02-03 |
| Author: | Francois Michonneau [aut, cre], Joseph Brown [aut], David Winter [aut] |
| Maintainer: | Francois Michonneau <francois.michonneau at gmail.com> |
| BugReports: | https://github.com/ropensci/rotl/issues |
| License: | BSD_2_clause + file LICENSE |
| URL: | https://github.com/ropensci/rotl |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | rotl results |
| Reference manual: | rotl.pdf |
| Vignettes: |
Connecting data to Open Tree trees How to use rotl? Using the Open Tree synthesis in a comparative analysis |
| Package source: | rotl_0.5.0.tar.gz |
| Windows binaries: | r-devel: rotl_0.5.0.zip, r-release: rotl_0.5.0.zip, r-oldrel: rotl_0.5.0.zip |
| OS X Snow Leopard binaries: | r-release: rotl_0.5.0.tgz, r-oldrel: not available |
| OS X Mavericks binaries: | r-release: rotl_0.5.0.tgz |
| Old sources: | rotl archive |