Provides immunoglobulin (Ig) sequence lineage reconstruction, diversity profiling, and amino acid property analysis. Also provides core functionality for other tools in the Change-O suite.
| Version: | 0.2.3 |
| Depends: | R (≥ 3.1.2), ggplot2 (≥ 2.0.0) |
| Imports: | dplyr, graphics, grid, igraph (≥ 1.0.0), lazyeval, methods, scales, seqinr, stats, stringi, utils |
| Suggests: | knitr, rmarkdown, testthat |
| Published: | 2016-02-22 |
| Author: | Jason Vander Heiden [aut, cre], Namita Gupta [aut], Daniel Gadala-Maria [ctb], Susanna Marquez [ctb], Roy Jiang [ctb], Steven Kleinstein [aut, cph] |
| Maintainer: | Jason Vander Heiden <jason.vanderheiden at yale.edu> |
| BugReports: | https://bitbucket.org/kleinstein/alakazam/issues |
| License: | CC BY-NC-SA 4.0 |
| URL: | http://clip.med.yale.edu/changeo |
| NeedsCompilation: | no |
| Citation: | alakazam citation info |
| Materials: | README NEWS |
| CRAN checks: | alakazam results |
| Reference manual: | alakazam.pdf |
| Vignettes: |
Analysis of amino acid physicochemical properties Diversity analysis Ig lineage reconstruction |
| Package source: | alakazam_0.2.3.tar.gz |
| Windows binaries: | r-devel: alakazam_0.2.3.zip, r-release: alakazam_0.2.3.zip, r-oldrel: alakazam_0.2.3.zip |
| OS X Snow Leopard binaries: | r-release: alakazam_0.2.3.tgz, r-oldrel: not available |
| OS X Mavericks binaries: | r-release: alakazam_0.2.3.tgz |
| Old sources: | alakazam archive |
| Reverse depends: | shazam |