SURFACE is a data-driven phylogenetic comparative method for fitting stabilizing selection models to continuous trait data, building on the ouch package. The main functions fit a series of Hansen models using stepwise AIC, then identify cases of convergent evolution where multiple lineages have shifted to the same adaptive peak.
| Version: | 0.4-1 |
| Depends: | R (≥ 2.6), ape, ouch, MASS, geiger |
| Suggests: | igraph |
| Published: | 2014-02-14 |
| Author: | Travis Ingram |
| Maintainer: | Travis Ingram <travis.ingram at otago.ac.nz> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | http://www.people.fas.harvard.edu/~ingram/web/surface.html |
| NeedsCompilation: | no |
| Citation: | surface citation info |
| In views: | Phylogenetics |
| CRAN checks: | surface results |
| Reference manual: | surface.pdf |
| Vignettes: |
Introduction to surface |
| Package source: | surface_0.4-1.tar.gz |
| Windows binaries: | r-devel: surface_0.4-1.zip, r-release: surface_0.4-1.zip, r-oldrel: surface_0.4-1.zip |
| OS X Snow Leopard binaries: | r-release: surface_0.4-1.tgz, r-oldrel: surface_0.4-1.tgz |
| OS X Mavericks binaries: | r-release: surface_0.4-1.tgz |
| Old sources: | surface archive |