signal.hsmm

Predict Presence of Signal Peptides

signal.hsmm predicts presence of signal peptides in eukaryotic proteins using hidden semi-Markov models. The implemented algorithm can be accessed as a web-based service http://michbur.shinyapps.io/signalhsmm/

Local instance of signal.hsmm

signal.hsmm can be also used locally as the R package. It can be installed from CRAN using:

install.packages("signal.hsmm")

You can install the latest development version of the code using the devtools R package.

# Install devtools, if you haven't already.
install.packages("devtools")

library(devtools)
install_github("signal.hsmm", "michbur")

After installation GUI can be accessed locally:

R library(signal.hsmm) gui_signal.hsmm() All signal.hsmm functionalities can be also invoked in batch mode, for example:

run_signal.hsmm(benchmark_dat[1:10])