ppiPre: Predict protein-protein interactions based on functional and
topological similarities
This package implements several functions useful for computing similarities between proteins based on their GO annotation, KEGG annotation and PPI network topology. It integrates these similarities to predict PPIs using an SVM classifier. Twenty species are supported, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, E coli strain K12 and strain Sakai, Fly, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, Streptomyces coelicolor and Zebrafish.
| Version: |
1.5 |
| Depends: |
R (≥ 2.15) |
| Imports: |
AnnotationDbi, igraph, e1071 |
| Suggests: |
GO.db, org.Sc.sgd.db, org.Hs.eg.db, KEGG.db, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sco.eg.db, org.Ss.eg.db, org.Xl.eg.db |
| Published: |
2013-07-28 |
| Author: |
Yue Deng, Rongjie Shao, Gang Wang, Yuanjun Sun |
| Maintainer: |
Yue Deng <anfdeng at 163.com> |
| License: |
Artistic-2.0 |
| NeedsCompilation: |
no |
| CRAN checks: |
ppiPre results |
Downloads: