A set of tools for identifying genes whose differential expression is associated with measurements of other covariates on a continuous scale. These methods rely on generalized additive partially linear models which can be fitted efficiently using a B-spline basis approximation. Still under development: methods for interfacing with objects extending the eSet class and a function to pass linear models in edgeR and DEseq format.
Version: | 1.0 |
Depends: | R (≥ 2.14.2), MASS, splines, limma, R.oo |
Suggests: | Biobase, edgeR, DESeq |
Published: | 2012-05-09 |
Author: | Jonas Mueller |
Maintainer: | Jonas <jonasmueller303 at hotmail.com> |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
NeedsCompilation: | no |
CRAN checks: | plmDE results |
Reference manual: | plmDE.pdf |
Package source: | plmDE_1.0.tar.gz |
Windows binaries: | r-devel: plmDE_1.0.zip, r-release: plmDE_1.0.zip, r-oldrel: plmDE_1.0.zip |
OS X Snow Leopard binaries: | r-release: plmDE_1.0.tgz, r-oldrel: plmDE_1.0.tgz |
OS X Mavericks binaries: | r-release: plmDE_1.0.tgz |