This is the package for implementing the method in "Bias Correction in RNA-Seq Short-read Counts using Penalized Regression." It first using a penalized regression to determine an appropriate surrounding sequence, then refits the model using the dinucleotide expansion.
| Version: | 0.9.1 |
| Depends: | mseq, lars |
| Published: | 2012-02-03 |
| Author: | David Dalpiaz |
| Maintainer: | David Dalpiaz <dalpiaz2 at illinois.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | http://www.r-project.org |
| NeedsCompilation: | no |
| CRAN checks: | lmbc results |
| Reference manual: | lmbc.pdf |
| Package source: | lmbc_0.9.1.tar.gz |
| Windows binaries: | r-devel: lmbc_0.9.1.zip, r-release: lmbc_0.9.1.zip, r-oldrel: lmbc_0.9.1.zip |
| OS X Snow Leopard binaries: | r-release: lmbc_0.9.1.tgz, r-oldrel: lmbc_0.9.1.tgz |
| OS X Mavericks binaries: | r-release: lmbc_0.9.1.tgz |
| Old sources: | lmbc archive |