hapassoc: Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm

The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.

Version: 1.2-7
Depends: R (≥ 2.6.0), stats
Published: 2014-08-25
Author: K. Burkett, B. McNeney, J. Graham, with code for case-control data contributed by Zhijian Chen
Maintainer: K. Burkett <kburkett at sfu.ca>
License: GPL-2
URL: http://stat.sfu.ca/statgen/research/hapassoc.html
NeedsCompilation: yes
Citation: hapassoc citation info
Materials: ChangeLog
In views: Genetics
CRAN checks: hapassoc results


Reference manual: hapassoc.pdf
Vignettes: hapassoc
Package source: hapassoc_1.2-7.tar.gz
Windows binaries: r-devel: hapassoc_1.2-7.zip, r-release: hapassoc_1.2-7.zip, r-oldrel: hapassoc_1.2-7.zip
OS X Snow Leopard binaries: r-release: hapassoc_1.2-7.tgz, r-oldrel: hapassoc_1.2-7.tgz
OS X Mavericks binaries: r-release: hapassoc_1.2-7.tgz
Old sources: hapassoc archive