The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.
| Version: | 0.0.2 |
| Depends: | ggplot2, grid, reshape2 |
| Suggests: | knitr, dendsort, RColorBrewer |
| Published: | 2014-09-29 |
| Author: | Ryo Sakai |
| Maintainer: | Ryo Sakai <ryo.sakai at esat.kuleuven.be> |
| License: | GPL-2 | GPL-3 |
| URL: | https://bitbucket.org/biovizleuven/gapmap/ |
| NeedsCompilation: | no |
| CRAN checks: | gapmap results |
| Reference manual: | gapmap.pdf |
| Vignettes: |
An Introduction to the gapmap package An example with a TCGA dataset |
| Package source: | gapmap_0.0.2.tar.gz |
| Windows binaries: | r-devel: gapmap_0.0.2.zip, r-release: gapmap_0.0.2.zip, r-oldrel: gapmap_0.0.2.zip |
| OS X Snow Leopard binaries: | r-release: gapmap_0.0.2.tgz, r-oldrel: gapmap_0.0.2.tgz |
| OS X Mavericks binaries: | r-release: gapmap_0.0.2.tgz |
| Old sources: | gapmap archive |