chromoR: Analysis of chromosomal interactions data (correction,
segmentation and comparison)
chromoR provides users with a statistical pipeline for analysing chromosomal interactions data (Hi-C data).It combines wavelet methods and a Bayesian approach for correction (bias and noise) and comparison (detecting significant changes between Hi-C maps) of Hi-C contact maps.In addition, it also support detection of change points in 1D Hi-C contact profiles.
| Version: |
1.0 |
| Depends: |
R (≥ 2.15.2), haarfisz, gdata |
| Published: |
2014-02-11 |
| Author: |
Yoli Shavit |
| Maintainer: |
Yoli Shavit <ys388 at cam.ac.uk> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: |
no |
| CRAN checks: |
chromoR results |
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