calmate: CalMaTe - Improved allele-specific copy number of SNP arrays for downstream segmentation

A multi-array post-processing method of allele-specific copy-number estimates (ASCNs)

Version: 0.11.0
Depends: R (≥ 2.15.0), R.utils (≥ 1.27.1), aroma.core (≥ 2.11.0)
Imports: utils, MASS, R.methodsS3 (≥ 1.5.2), R.oo (≥ 1.15.8), matrixStats (≥ 0.8.12), R.filesets (≥ 2.3.0)
Published: 2013-10-17
Author: Maria Ortiz [aut, ctb], Ander Aramburu [ctb], Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut, ctb], Angel Rubio [aut, ctb]
Maintainer: Henrik Bengtsson <henrikb at>
License: LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)]
NeedsCompilation: no
Materials: NEWS
CRAN checks: calmate results


Reference manual: calmate.pdf
Package source: calmate_0.11.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: calmate_0.11.0.tgz, r-oldrel: calmate_0.11.0.tgz
OS X Mavericks binaries: r-release: calmate_0.11.0.tgz
Old sources: calmate archive