This is an R package for interfacing with the BIOM format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods.
| Version: | 0.3.12 |
| Depends: | R (≥ 3.0.0), methods |
| Imports: | plyr (≥ 1.8), RJSONIO (≥ 1.0.3), Matrix (≥ 1.0.12) |
| Suggests: | testthat (≥ 0.7.1), knitr (≥ 1.3) |
| Published: | 2014-02-24 |
| Author: | Paul J. McMurdie and the biom-format team http://biom-format.org/ |
| Maintainer: | Paul J. McMurdie <mcmurdie at stanford.edu> |
| BugReports: | https://github.com/joey711/biom/issues |
| License: | GPL-2 |
| URL: | https://github.com/joey711/biom/, http://biom-format.org/ |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | biom results |
| Reference manual: | biom.pdf |
| Vignettes: |
BIOM support in R main vignette |
| Package source: | biom_0.3.12.tar.gz |
| Windows binaries: | r-devel: biom_0.3.12.zip, r-release: biom_0.3.12.zip, r-oldrel: biom_0.3.12.zip |
| OS X Snow Leopard binaries: | r-release: biom_0.3.12.tgz, r-oldrel: biom_0.3.12.tgz |
| OS X Mavericks binaries: | r-release: biom_0.3.12.tgz |
| Old sources: | biom archive |
| Reverse suggests: | qiimer |