Methods for analyzing DNA copy-number data. Specifically,
this package implements the multi-source copy-number normalization (MSCN)
method for normalizing copy-number data obtained on various platforms and
technologies. It also implements the TumorBoost method for normalizing
paired tumor-normal SNP data.
| Version: |
1.5.0 |
| Depends: |
R (≥ 2.15.0), R.utils (≥ 1.27.1), aroma.core (≥ 2.11.0) |
| Imports: |
R.methodsS3 (≥ 1.5.2), R.oo (≥ 1.15.8), R.filesets (≥
2.3.0), R.cache (≥ 0.8.1), matrixStats (≥ 0.8.12), PSCBS (≥
0.38.4) |
| Suggests: |
aroma.light (≥ 1.28.0), DNAcopy (≥ 1.30.0), GLAD (≥
1.12.0) |
| Published: |
2013-10-17 |
| Author: |
Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut] |
| Maintainer: |
Henrik Bengtsson <henrikb at braju.com> |
| License: |
LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)] |
| URL: |
http://www.aroma-project.org/ |
| NeedsCompilation: |
no |
| Citation: |
aroma.cn citation info |
| Materials: |
NEWS |
| CRAN checks: |
aroma.cn results |