Copy-number analysis of large microarray data sets

Methods for analyzing DNA copy-number data. Specifically, this package implements the multi-source copy-number normalization (MSCN) method for normalizing copy-number data obtained on various platforms and technologies. It also implements the TumorBoost method for normalizing paired tumor-normal SNP data.

Version: 1.5.0
Depends: R (≥ 2.15.0), R.utils (≥ 1.27.1), aroma.core (≥ 2.11.0)
Imports: R.methodsS3 (≥ 1.5.2), R.oo (≥ 1.15.8), R.filesets (≥ 2.3.0), R.cache (≥ 0.8.1), matrixStats (≥ 0.8.12), PSCBS (≥ 0.38.4)
Suggests: aroma.light (≥ 1.28.0), DNAcopy (≥ 1.30.0), GLAD (≥ 1.12.0)
Published: 2013-10-17
Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut]
Maintainer: Henrik Bengtsson <henrikb at>
License: LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)]
NeedsCompilation: no
Citation: citation info
Materials: NEWS
CRAN checks: results


Reference manual:
Package source: aroma.cn_1.5.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: aroma.cn_1.5.0.tgz, r-oldrel: aroma.cn_1.5.0.tgz
OS X Mavericks binaries: r-release: aroma.cn_1.5.0.tgz
Old sources: archive

Reverse dependencies:

Reverse suggests: MPAgenomics