Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
| Version: |
0.43.0 |
| Depends: |
R (≥ 3.0.0), utils |
| Imports: |
R.methodsS3 (≥ 1.6.1), R.oo (≥ 1.18.0), R.utils (≥ 1.32.4), R.cache (≥ 0.9.0), matrixStats (≥ 0.10.0), DNAcopy (≥
1.36.0) |
| Suggests: |
aroma.light (≥ 1.32.0), Hmisc (≥ 3.14-4), R.rsp (≥
0.19.0), R.devices (≥ 2.9.2), ggplot2 (≥ 1.0.0) |
| Published: |
2014-06-10 |
| Author: |
Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut],
Venkatraman E. Seshan [aut],
Adam B. Olshen [aut],
Paul T. Spellman [aut],
Richard A. Olshen [aut] |
| Maintainer: |
Henrik Bengtsson <henrikb at braju.com> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
no |
| Citation: |
PSCBS citation info |
| Materials: |
NEWS |
| CRAN checks: |
PSCBS results |