PCIT: PCIT algorithm - Partial Correlation Coefficient with Information Theory

This package provides the necessary functions for performing the Partial Correlation coefficient with Information Theory (PCIT) algorithm developed by Reverter and Chan (2008). The PCIT algorithm identifies meaningful correlations to define edges in a weighted network. The algorithm can be applied to any correlation-based network including but not limited to gene co-expression networks.

Version: 1.04-5
Depends: R (≥ 2.10)
Suggests: Rmpi
Published: 2014-01-29
Author: Nathan S. Watson-Haigh
Maintainer: Nathan S. Watson-Haigh <nathan.haigh at acpfg.com.au>
License: GPL-3
URL: http://dx.doi.org/10.1093/bioinformatics/btn482 http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/3/411
NeedsCompilation: yes
Materials: README ChangeLog
CRAN checks: PCIT results


Reference manual: PCIT.pdf
Package source: PCIT_1.04-5.tar.gz
Windows binaries: r-devel: PCIT_1.04-5.zip, r-release: PCIT_1.04-5.zip, r-oldrel: PCIT_1.04-5.zip
OS X Snow Leopard binaries: r-release: PCIT_1.04-5.tgz, r-oldrel: PCIT_1.04-5.tgz
OS X Mavericks binaries: r-release: PCIT_1.04-5.tgz
Old sources: PCIT archive