IsoGene: Testing for monotonic relationship between gene expression and
doses in a microarray experiment
Several testing procedures including the global likelihood ratio test
(Bartholomew, 1961), Williams (1971, 1972), Marcus (1976), M (Hu et al. 2005) and
the modified M (Lin et al. 2007) are used to test for the monotonic trend in gene
expression with respect to doses. BH (Benjamini and Hochberg 1995) and BY
(Benjamini and Yekutieli 2004) FDR controlling procedures are applied to adjust the
raw p-values obtained from the permutations.
| Version: |
1.0-22 |
| Depends: |
R (≥ 2.10), Iso |
| Imports: |
xtable, Biobase, affy, ff (≥ 2.0.0) |
| Suggests: |
tcltk |
| Published: |
2013-11-05 |
| Author: |
Lin et al. |
| Maintainer: |
Martin Otava <martin.otava at uhasselt.be> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| Materials: |
NEWS |
| CRAN checks: |
IsoGene results |
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