GrammR: Graphical Representation and Modeling of Metagenomic Reads

Represents metagenomic samples on the Euclidean space to examine similarity amongst samples by studying clusters in the model. Given the matrix of metagenomic counts for samples, this package (1) quantifies dissimilarity between samples using Kendall's tau-distance, (2) constructs multidimensional models of different dimension, and (3) plots the models for visualization and comparison.

Version: 1.0.0
Depends: R (≥ 3.0.0)
Imports: gWidgets, RGtk2, gWidgetsRGtk2, MASS, cluster, rgl, GUniFrac, ape
Published: 2014-08-11
Author: Deepak N. Ayyala, Shili Lin, Department of Statistics, The Ohio State University, Columbus, Ohio, USA.
Maintainer: Deepak Nag Ayyala <ayyala.1 at osu.edu>
License: LGPL-3
NeedsCompilation: yes
CRAN checks: GrammR results

Downloads:

Reference manual: GrammR.pdf
Package source: GrammR_1.0.0.tar.gz
Windows binaries: r-devel: GrammR_1.0.0.zip, r-release: GrammR_1.0.0.zip, r-oldrel: GrammR_1.0.0.zip
OS X Snow Leopard binaries: r-release: GrammR_1.0.0.tgz, r-oldrel: GrammR_1.0.0.tgz
OS X Mavericks binaries: r-release: not available