CRAN Package Check Results for Package titan

Last updated on 2014-10-02 01:48:30.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-16 0.98 25.09 26.07 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-16 0.92 24.07 24.99 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-16 49.28 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-16 45.22 NOTE
r-devel-osx-x86_64-clang 1.0-16 49.21 NOTE
r-devel-windows-ix86+x86_64 1.0-16 4.00 35.00 39.00 NOTE
r-patched-linux-x86_64 1.0-16 0.96 26.49 27.45 NOTE
r-patched-solaris-sparc 1.0-16 317.60 NOTE
r-patched-solaris-x86 1.0-16 71.10 NOTE
r-release-linux-ix86 1.0-16 1.40 35.31 36.70 NOTE
r-release-linux-x86_64 1.0-16 0.96 25.87 26.83 NOTE
r-release-osx-x86_64-mavericks 1.0-16 NOTE
r-release-osx-x86_64-snowleopard 1.0-16 NOTE
r-release-windows-ix86+x86_64 1.0-16 4.00 41.00 45.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0-16 5.00 40.00 45.00 NOTE

Check Details

Version: 1.0-16
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘CONTENTS’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0-16
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘MASS’ ‘boot’ ‘lattice’ ‘splines’ ‘tcltk’
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-16
Check: R code for possible problems
Result: NOTE
    titan : titan.widget : widget2: warning in matrix(FALSE, nr = ngene, nc
     = 2): partial argument match of ‘nr’ to ‘nrow’
    titan : titan.widget : widget2: warning in matrix(FALSE, nr = ngene, nc
     = 2): partial argument match of ‘nc’ to ‘ncol’
    titan : titan.widget : widget2: warning in matrix(FALSE, nr = ngene, nc
     = 1): partial argument match of ‘nr’ to ‘nrow’
    titan : titan.widget : widget2: warning in matrix(FALSE, nr = ngene, nc
     = 1): partial argument match of ‘nc’ to ‘ncol’
    titan : titan.input : data.levels : dummy: warning in matrix(nr = len,
     nc = nlevels): partial argument match of ‘nr’ to ‘nrow’
    titan : titan.input : data.levels : dummy: warning in matrix(nr = len,
     nc = nlevels): partial argument match of ‘nc’ to ‘ncol’
    titan : titan.input : data.levels: warning in matrix(nr =
     length(dat$x), nc = ncontr.rx): partial argument match of ‘nr’ to
     ‘nrow’
    titan : titan.input : data.levels: warning in matrix(nr =
     length(dat$x), nc = ncontr.rx): partial argument match of ‘nc’ to
     ‘ncol’
    titan : titan.create.formulae: warning in matrix(NA, nr =
     input$data$levels$ngene, nc = input$data$levels$ncontr.rx + 1):
     partial argument match of ‘nr’ to ‘nrow’
    titan : titan.create.formulae: warning in matrix(NA, nr =
     input$data$levels$ngene, nc = input$data$levels$ncontr.rx + 1):
     partial argument match of ‘nc’ to ‘ncol’
    titan : titan.interpolate: warning in matrix(NA, nr =
     length(gene.valid), nc = 1 + nrx1): partial argument match of ‘nr’ to
     ‘nrow’
    titan : titan.interpolate: warning in matrix(NA, nr =
     length(gene.valid), nc = 1 + nrx1): partial argument match of ‘nc’ to
     ‘ncol’
    titan : titan.interpolate: warning in matrix(NA, nr = ngene1, nc =
     nrx1): partial argument match of ‘nr’ to ‘nrow’
    titan : titan.interpolate: warning in matrix(NA, nr = ngene1, nc =
     nrx1): partial argument match of ‘nc’ to ‘ncol’
    titan : titan.interpolate: warning in matrix(NA, nr = ngene0, nc =
     nrx1): partial argument match of ‘nr’ to ‘nrow’
    titan : titan.interpolate: warning in matrix(NA, nr = ngene0, nc =
     nrx1): partial argument match of ‘nc’ to ‘ncol’
    titan : titan.interpolate: warning in matrix(colMeans(log10fold.g0), nr
     = ngene1, nc = nrx1, byrow = TRUE): partial argument match of ‘nr’ to
     ‘nrow’
    titan : titan.interpolate: warning in matrix(colMeans(log10fold.g0), nr
     = ngene1, nc = nrx1, byrow = TRUE): partial argument match of ‘nc’ to
     ‘ncol’
    titan : titan.bootstrap : boot.fun: warning in matrix(NA, nr = ngene0,
     nc = nrx1): partial argument match of ‘nr’ to ‘nrow’
    titan : titan.bootstrap : boot.fun: warning in matrix(NA, nr = ngene0,
     nc = nrx1): partial argument match of ‘nc’ to ‘ncol’
    titan : titan.bootstrap : boot.fun: warning in matrix(NA, nr = ngene1,
     nc = nrx1): partial argument match of ‘nr’ to ‘nrow’
    titan : titan.bootstrap : boot.fun: warning in matrix(NA, nr = ngene1,
     nc = nrx1): partial argument match of ‘nc’ to ‘ncol’
    titan : titan.bootstrap : boot.fun: warning in
     matrix(colMeans(theta.star.g0), nc = nrx1, nr = ngene1, byrow =
     TRUE): partial argument match of ‘nr’ to ‘nrow’
    titan : titan.bootstrap : boot.fun: warning in
     matrix(colMeans(theta.star.g0), nc = nrx1, nr = ngene1, byrow =
     TRUE): partial argument match of ‘nc’ to ‘ncol’
    titan : titan.bootstrap.baselineonly : boot.fun: warning in matrix(NA,
     nr = (ngene1 - 1) * ngene1/2, nc = 1): partial argument match of ‘nr’
     to ‘nrow’
    titan : titan.bootstrap.baselineonly : boot.fun: warning in matrix(NA,
     nr = (ngene1 - 1) * ngene1/2, nc = 1): partial argument match of ‘nc’
     to ‘ncol’
    titan : print.titanboot: warning in matrix(NA, nr = len, nc = 7):
     partial argument match of ‘nr’ to ‘nrow’
    titan : print.titanboot: warning in matrix(NA, nr = len, nc = 7):
     partial argument match of ‘nc’ to ‘ncol’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64