Last updated on 2014-10-02 01:48:28.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.5-5 | 0.84 | 21.51 | 22.35 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.5-5 | 0.78 | 21.02 | 21.80 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.5-5 | 47.13 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.5-5 | 44.21 | NOTE | |||
| r-devel-osx-x86_64-clang | 1.5-5 | 42.08 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.5-5 | 3.00 | 31.00 | 34.00 | NOTE | |
| r-patched-linux-x86_64 | 1.5-5 | 0.78 | 23.17 | 23.96 | NOTE | |
| r-patched-solaris-sparc | 1.5-5 | 293.50 | NOTE | |||
| r-patched-solaris-x86 | 1.5-5 | 65.10 | NOTE | |||
| r-release-linux-ix86 | 1.5-5 | 1.10 | 31.01 | 32.11 | NOTE | |
| r-release-linux-x86_64 | 1.5-5 | 0.77 | 26.39 | 27.16 | NOTE | |
| r-release-osx-x86_64-mavericks | 1.5-5 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 1.5-5 | 3.00 | 34.00 | 37.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 1.5-5 | 3.00 | 34.00 | 37.00 | NOTE |
Version: 1.5-5
Check: top-level files
Result: NOTE
Non-standard file/directory found at top level:
‘index’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.5-5
Check: dependencies in R code
Result: NOTE
':::' calls which should be '::':
‘foreach:::getDoParRegistered’ ‘foreach:::registerDoSEQ’
See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.5-5
Check: R code for possible problems
Result: NOTE
createImage: no visible global function definition for ‘brewer.pal’
createImage: no visible global function definition for
‘trellis.par.set’
createImage: no visible global function definition for ‘levelplot’
exportAsGDAL: no visible global function definition for ‘coordinates<-’
exportAsGDAL: no visible global function definition for ‘writeGDAL’
searchClusters: no visible global function definition for
‘coordinates<-’
species.richness: no visible global function definition for ‘%dopar%’
species.richness: no visible global function definition for ‘foreach’
species.richness.cv: no visible global function definition for
‘%dopar%’
species.richness.cv: no visible global function definition for
‘foreach’
species.richness.nonweighted: no visible global function definition for
‘%dopar%’
species.richness.nonweighted: no visible global function definition for
‘foreach’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64
Version: 1.5-5
Check: Rd line widths
Result: NOTE
Rd file 'createImage.Rd':
\examples lines wider than 100 characters:
landwatermask.nocoast, distances=1:5, weight=0.5, dimension,
shift, resolution=1, upperbound=3000, all.species=1:2)
Rd file 'exportAsGDAL.Rd':
\usage lines wider than 90 characters:
exportAsGDAL(grid, shift, resolution, directory=getwd(), filename="grid.tif", drivername="GTiff")
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.5-5
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘rgdal’
Flavor: r-release-osx-x86_64-mavericks
Version: 1.5-5
Check: R code for possible problems
Result: NOTE
exportAsGDAL: no visible global function definition for ‘coordinates<-’
exportAsGDAL: no visible global function definition for ‘writeGDAL’
searchClusters: no visible global function definition for
‘coordinates<-’
Flavor: r-release-osx-x86_64-mavericks
Version: 1.5-5
Check: examples
Result: ERROR
Running examples in ‘sperich-Ex.R’ failed
The error most likely occurred in:
> ### Name: adjustment
> ### Title: Adjustment of interpolated species richness
> ### Aliases: adjustment
>
> ### ** Examples
>
> ##load data
> data(dataset.all.species)
> data(dataset.landwater)
>
> ##create grid parameters
> dimension <- getDimension(dataset.all.species, resolution=1)
> shift <- getShift(dataset.all.species)
>
> ##create landwatermask
> landwatermask.nocoast <- createLandwatermask(dataset.landwater,
+ dimension, shift, resolution=1)
>
> ##estimate species richness
> species.richness.weighted <- species.richness(dataset.all.species,
+ landwatermask.nocoast, distances=1:5, weight=0.5, dimension, shift, resolution=1,
+ upperbound=5, all.species=1:2)
>
> ##prepare adjustment
> noninterpolatedgrid <- createNonInterpolatedGrid(dataset.all.species,
+ dimension, shift, resolution=1, all.species=-1)
> clusterlimit <- 100
>
> clusterlist <- searchClusters(species.richness.weighted,
+ dimension, shift, resolution=1, clusterlimit)
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘rgdal’
Error in searchClusters(species.richness.weighted, dimension, shift, resolution = 1, :
Package rgdal not available!
Execution halted
Flavor: r-release-osx-x86_64-mavericks