CRAN Package Check Results for Package spacejam

Last updated on 2014-10-02 01:48:28.

Check Details

Version: 1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘Matrix’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘Matrix’ ‘igraph’ ‘splines’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.1
Check: R code for possible problems
Result: NOTE
    SJ: no visible binding for global variable ‘bs’
    SJ: no visible global function definition for ‘get.adjacency’
    SJ : <anonymous>: no visible global function definition for
     ‘graph.adjacency’
    SJ: no visible binding for global variable ‘ecount’
    SJ.dag: no visible binding for global variable ‘bs’
    SJ.dag : <anonymous>: no visible global function definition for
     ‘graph.adjacency’
    SJ.dag: no visible binding for global variable ‘ecount’
    SJpath: no visible global function definition for ‘get.adjacency’
    SJpath : <anonymous>: no visible global function definition for
     ‘graph.adjacency’
    generate.dag.data: no visible global function definition for ‘vcount’
    generate.dag.data: no visible global function definition for
     ‘topological.sort’
    generate.dag.data: no visible global function definition for
     ‘neighbors’
    grpsel: no visible global function definition for ‘Matrix’
    moralize: no visible global function definition for ‘vcount’
    moralize: no visible global function definition for ‘as.undirected’
    moralize: no visible global function definition for ‘get.adjacency’
    moralize: no visible global function definition for ‘add.edges’
    moralize: no visible global function definition for ‘simplify’
    plot.SJ: no visible global function definition for
     ‘layout.fruchterman.reingold’
    plot.SJ.dag: no visible global function definition for
     ‘layout.fruchterman.reingold’
    print.SJ: no visible binding for global variable ‘ecount’
    print.SJ: no visible global function definition for ‘ecount’
    print.SJ.dag: no visible binding for global variable ‘ecount’
    print.SJ.dag: no visible global function definition for ‘ecount’
    rdag: no visible global function definition for ‘graph.adjacency’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.1
Check: Rd line widths
Result: NOTE
    Rd file 'SJ.Rd':
     \examples lines wider than 100 characters:
     #with standard deviations of 1, 0.5 and 0.5, (i.e. giving more weight to linear association than quadratic or cubic)
     #Fit conditional independence graph at one lambda , using the default basis functions (cubic polynomials).
     plot(g, layout=mylayout, edge.color = "gray50", vertex.color = "red", vertex.size = 3, vertex.label = NA, edge.arrow.size = 0.4, main=" ... [TRUNCATED]
    
    Rd file 'generate.dag.data.Rd':
     \usage lines wider than 90 characters:
     generate.dag.data(g, n, basesd = 1, basemean = 0, bfuns = function(x){cbind(x, x^2, x^3)},
     \examples lines wider than 100 characters:
     #with standard deviations of 1, 0.5 and 0.5, (i.e. giving more weight to linear association than quadratic or cubic)
    
    Rd file 'spacejam-package.Rd':
     \examples lines wider than 100 characters:
     #with standard deviations of 1, 0.5 and 0.5, (i.e. giving more weight to linear association than quadratic or cubic)
     plot(g, layout=mylayout, edge.color = "gray50", vertex.color = "red", vertex.size = 3, vertex.label = NA, edge.arrow.size = 0.4, main=" ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘Matrix’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘Matrix’ ‘igraph’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'Matrix' which was already attached by Depends.
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard