CRAN Package Check Results for Package qpcR

Last updated on 2014-10-02 01:48:24.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4-0 5.59 83.13 88.72 OK
r-devel-linux-x86_64-debian-gcc 1.4-0 5.13 85.70 90.83 OK
r-devel-linux-x86_64-fedora-clang 1.4-0 194.73 OK
r-devel-linux-x86_64-fedora-gcc 1.4-0 184.96 OK
r-devel-osx-x86_64-clang 1.4-0 146.54 OK
r-devel-windows-ix86+x86_64 1.4-0 16.00 156.00 172.00 OK
r-patched-linux-x86_64 1.4-0 5.58 91.14 96.72 OK
r-patched-solaris-sparc 1.4-0 1036.80 NOTE
r-patched-solaris-x86 1.4-0 257.20 NOTE
r-release-linux-ix86 1.4-0 7.04 109.64 116.68 OK
r-release-linux-x86_64 1.4-0 5.71 90.18 95.89 OK
r-release-osx-x86_64-mavericks 1.4-0 OK
r-release-osx-x86_64-snowleopard 1.4-0 ERROR
r-release-windows-ix86+x86_64 1.4-0 17.00 165.00 182.00 OK
r-oldrel-windows-ix86+x86_64 1.4-0 18.00 168.00 186.00 OK

Check Details

Version: 1.4-0
Check: installed package size
Result: NOTE
     installed size is 5.2Mb
     sub-directories of 1Mb or more:
     data 3.8Mb
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.4-0
Check: examples
Result: ERROR
    Running examples in ‘qpcR-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: plot.pcrfit
    > ### Title: Plotting qPCR data with fitted curves/confidence bands/error
    > ### bars
    > ### Aliases: plot.pcrfit
    > ### Keywords: models nonlinear
    >
    > ### ** Examples
    >
    > ## Single plot.
    > m1 <- pcrfit(reps, 1, 2, l5)
    > plot(m1)
    >
    > ## Add another plot in blue
    > ## with 99% confidence interval.
    > m2 <- pcrfit(reps, 1, 12, l5)
    > plot(m2, add = TRUE, col = 4, confband = "confidence", level = 0.99)
    >
    > ## Plot a 'modlist' batch with coloring of replicates.
    > ml1 <- modlist(reps, 1, 2:13, model = l4)
    Making model for F1.1 (l4)
     => Fitting passed...
    
    Making model for F1.2 (l4)
     => Fitting passed...
    
    Making model for F1.3 (l4)
     => Fitting passed...
    
    Making model for F1.4 (l4)
     => Fitting passed...
    
    Making model for F2.1 (l4)
     => Fitting passed...
    
    Making model for F2.2 (l4)
     => Fitting passed...
    
    Making model for F2.3 (l4)
     => Fitting passed...
    
    Making model for F2.4 (l4)
     => Fitting passed...
    
    Making model for F3.1 (l4)
     => Fitting passed...
    
    Making model for F3.2 (l4)
     => Fitting passed...
    
    Making model for F3.3 (l4)
     => Fitting passed...
    
    Making model for F3.4 (l4)
     => Fitting passed...
    
    Calculating delta of first/second derivative maxima...
    .........10..
    > plot(ml1, col = gl(3,4))
    >
    > ## Subset of data.
    > plot(ml1, type = "n", col = rep(1:3, each = 4),
    + par2D = list(xlim = c(10, 30)))
    >
    > ## Plot a 'replist'.
    > rl1 <- replist(ml1, group = gl(3, 4))
    Making model for replicates: F1.1 F1.2 F1.3 F1.4 => l4
     => Fitting passed...
    
    Making model for replicates: F2.1 F2.2 F2.3 F2.4 => l4
     => Fitting passed...
    
    Making model for replicates: F3.1 F3.2 F3.3 F3.4 => l4
     => Fitting passed...
    
    > plot(rl1)
    >
    > ## Standard deviation instead of
    > ## replicate points; suppress plotting
    > ## of point symbols.
    > plot(rl1, type = "l", errbar = "sd",
    + par2D = list(pch = ""))
    >
    > ## 95% confidence values.
    > plot(rl1, errbar = "conf",
    + par2D = list(pch = ""))
    >
    > ## Plot single curves for diagnostics.
    > plot(ml1, which = "single", col = rep(1:3, each = 4))
    >
    > ## 3D plots of 'modlist's or 'replist's.
    > plot(ml1, which = "3D", col = rep(1:3, each = 4))
    Wed Oct 1 06:24:21 hagal.research.att.com R[44828] <Error>: unknown error code: invalid pixel format
    Wed Oct 1 06:24:21 hagal.research.att.com R[44828] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
    X Error of failed request: GLXBadContext
     Major opcode of failed request: 0 ()
     Serial number of failed request: 27
     Current serial number in output stream: 27
Flavor: r-release-osx-x86_64-snowleopard