Last updated on 2014-10-02 01:48:23.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1-15 | 15.77 | 29.84 | 45.61 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1-15 | 22.34 | 28.74 | 51.08 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1-15 | 87.96 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1-15 | 87.95 | NOTE | |||
| r-devel-osx-x86_64-clang | 0.1-15 | 75.58 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 0.1-15 | 106.00 | 55.00 | 161.00 | NOTE | |
| r-patched-linux-x86_64 | 0.1-15 | 22.60 | 30.30 | 52.89 | OK | |
| r-patched-solaris-sparc | 0.1-15 | 539.20 | OK | |||
| r-patched-solaris-x86 | 0.1-15 | 136.30 | OK | |||
| r-release-linux-ix86 | 0.1-15 | 28.67 | 39.63 | 68.30 | OK | |
| r-release-linux-x86_64 | 0.1-15 | 22.76 | 30.28 | 53.04 | OK | |
| r-release-osx-x86_64-mavericks | 0.1-15 | NOTE | ||||
| r-release-osx-x86_64-snowleopard | 0.1-15 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 0.1-15 | 96.00 | 57.00 | 153.00 | OK | |
| r-oldrel-windows-ix86+x86_64 | 0.1-15 | 101.00 | 62.00 | 163.00 | OK |
Version: 0.1-15
Check: R code for possible problems
Result: NOTE
.EMControl: no visible binding for global variable ‘.init.procedure’
.EMControl: no visible binding for global variable ‘.init.method’
.EMControl: no visible binding for global variable
‘.substitution.model’
.EMControl: no visible binding for global variable ‘.edist.model’
.EMControl: no visible binding for global variable ‘.identifier’
.EMControl: no visible binding for global variable ‘.code.type’
.EMControl: no visible binding for global variable ‘.em.method’
.EMControl: no visible binding for global variable ‘.boundary.method’
.EMControl: no visible binding for global variable ‘.se.model’
.show.option: no visible binding for global variable ‘.boundary.method’
.show.option: no visible binding for global variable ‘.code.type’
.show.option: no visible binding for global variable ‘.edist.model’
.show.option: no visible binding for global variable ‘.em.method’
.show.option: no visible binding for global variable ‘.identifier’
.show.option: no visible binding for global variable ‘.init.method’
.show.option: no visible binding for global variable ‘.init.procedure’
.show.option: no visible binding for global variable ‘.nucleotide’
.show.option: no visible binding for global variable ‘.snp’
.show.option: no visible binding for global variable
‘.substitution.model’
acode2aid.default: no visible binding for global variable ‘.amino.acid’
aid2acode.default: no visible binding for global variable ‘.amino.acid’
bootstrap.merge.seq: no visible binding for global variable
‘.code.type’
check.label: no visible binding for global variable ‘.label.method’
cid2aid.default: no visible binding for global variable ‘.genetic.code’
cid2aid.default: no visible binding for global variable ‘.amino.acid’
code2nid.default: no visible binding for global variable ‘.nucleotide’
code2nid.default: no visible binding for global variable
‘.missing.code’
find.best: no visible binding for global variable ‘.EMC’
find.best: no visible binding for global variable ‘.init.procedure’
find.best: no visible binding for global variable ‘.init.method’
find.consensus: no visible binding for global variable ‘.code.type’
gen.seq.HKY: no visible binding for global variable ‘.nucleotide’
gen.seq.SNP: no visible binding for global variable ‘.snp’
nid2aid.default: no visible binding for global variable ‘.amino.acid’
nid2aid.default: no visible binding for global variable ‘.nucleotide’
nid2aid.default: no visible binding for global variable ‘.genetic.code’
nid2aid.default : nid2aid.a.seq: no visible binding for global variable
‘.genetic.code’
nid2cid.default: no visible binding for global variable ‘.nucleotide’
nid2cid.default: no visible binding for global variable ‘.codon’
nid2cid.default: no visible binding for global variable ‘.genetic.code’
nid2cid.default : nid2cid.a.seq: no visible binding for global variable
‘.genetic.code’
nid2code.default: no visible binding for global variable ‘.nucleotide’
nid2code.default: no visible binding for global variable
‘.missing.code’
paml.baseml: no visible binding for global variable ‘.code.type’
phyclust: no visible binding for global variable ‘.EMC’
phyclust.Pt: no visible binding for global variable
‘.substitution.model’
phyclust.Pt: no visible binding for global variable ‘.code.type’
phyclust.e.step: no visible binding for global variable
‘.substitution.model’
phyclust.e.step: no visible binding for global variable ‘.identifier’
phyclust.e.step: no visible binding for global variable ‘.code.type’
phyclust.edist: no visible binding for global variable ‘.edist.model’
phyclust.em.step: no visible binding for global variable
‘.substitution.model’
phyclust.em.step: no visible binding for global variable ‘.identifier’
phyclust.em.step: no visible binding for global variable ‘.code.type’
phyclust.logL: no visible binding for global variable
‘.substitution.model’
phyclust.logL: no visible binding for global variable ‘.identifier’
phyclust.logL: no visible binding for global variable ‘.code.type’
phyclust.m.step: no visible binding for global variable
‘.substitution.model’
phyclust.m.step: no visible binding for global variable ‘.identifier’
phyclust.m.step: no visible binding for global variable ‘.code.type’
phyclust.se: no visible binding for global variable ‘.EMC’
phyclust.se.update: no visible binding for global variable ‘.EMC’
phyclust.update: no visible binding for global variable ‘.EMC’
plotdots: no visible binding for global variable ‘.code.type’
plotdots : <anonymous>: no visible binding for global variable
‘.missing.code’
plotdots: no visible binding for global variable ‘.missing.code’
plotfd: no visible binding for global variable ‘.Color’
plotgaps: no visible binding for global variable ‘.code.type’
plotgaps: no visible binding for global variable ‘.nucleotide’
plotgaps: no visible binding for global variable ‘.snp’
plothist: no visible binding for global variable ‘.Color’
plotnj: no visible binding for global variable ‘.Color’
plotstruct: no visible binding for global variable ‘.Color’
print.Pt: no visible binding for global variable ‘.nucleotide’
print.Pt: no visible binding for global variable ‘.snp’
prune.Mu: no visible binding for global variable ‘.code.type’
prune.Mu: no visible binding for global variable ‘.nucleotide’
prune.Mu: no visible binding for global variable ‘.snp’
read.fasta: no visible binding for global variable ‘.code.type’
read.phylip: no visible binding for global variable ‘.code.type’
read.seqgen: no visible binding for global variable ‘.code.type’
sid2snp.default: no visible binding for global variable ‘.snp’
sid2snp.default: no visible binding for global variable ‘.missing.code’
snp2sid.default: no visible binding for global variable ‘.snp’
snp2sid.default: no visible binding for global variable ‘.missing.code’
summary.phyclust: no visible binding for global variable ‘.nucleotide’
translate.EMC: no visible binding for global variable ‘.init.procedure’
translate.EMC: no visible binding for global variable ‘.init.method’
translate.EMC: no visible binding for global variable
‘.substitution.model’
translate.EMC: no visible binding for global variable ‘.edist.model’
translate.EMC: no visible binding for global variable ‘.identifier’
translate.EMC: no visible binding for global variable ‘.code.type’
translate.EMC: no visible binding for global variable ‘.em.method’
translate.EMC: no visible binding for global variable
‘.boundary.method’
translate.EMC.se: no visible binding for global variable
‘.init.procedure’
translate.EMC.se: no visible binding for global variable ‘.init.method’
translate.EMC.se: no visible binding for global variable
‘.substitution.model’
translate.EMC.se: no visible binding for global variable ‘.edist.model’
translate.EMC.se: no visible binding for global variable ‘.identifier’
translate.EMC.se: no visible binding for global variable ‘.code.type’
translate.EMC.se: no visible binding for global variable ‘.em.method’
translate.EMC.se: no visible binding for global variable
‘.boundary.method’
translate.EMC.se: no visible binding for global variable ‘.se.model’
translate.ret: no visible binding for global variable ‘.init.procedure’
translate.ret: no visible binding for global variable ‘.init.method’
translate.ret: no visible binding for global variable
‘.substitution.model’
translate.ret: no visible binding for global variable ‘.edist.model’
translate.ret: no visible binding for global variable ‘.identifier’
translate.ret: no visible binding for global variable ‘.code.type’
translate.ret: no visible binding for global variable ‘.em.method’
translate.ret: no visible binding for global variable
‘.boundary.method’
translate.ret: no visible binding for global variable ‘.nucleotide’
translate.ret: no visible binding for global variable ‘.snp’
translate.ret: no visible binding for global variable ‘.label.method’
translate.ret.se: no visible binding for global variable
‘.init.procedure’
translate.ret.se: no visible binding for global variable ‘.init.method’
translate.ret.se: no visible binding for global variable
‘.substitution.model’
translate.ret.se: no visible binding for global variable ‘.edist.model’
translate.ret.se: no visible binding for global variable ‘.identifier’
translate.ret.se: no visible binding for global variable ‘.code.type’
translate.ret.se: no visible binding for global variable ‘.em.method’
translate.ret.se: no visible binding for global variable
‘.boundary.method’
translate.ret.se: no visible binding for global variable ‘.nucleotide’
translate.ret.se: no visible binding for global variable ‘.snp’
translate.ret.se: no visible binding for global variable ‘.se.model’
write.fasta: no visible binding for global variable ‘.code.type’
write.paml: no visible binding for global variable ‘.code.type’
write.phylip: no visible binding for global variable ‘.code.type’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64
Version: 0.1-15
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
Running 'texi2dvi' on 'phyclust-guide.tex' failed.
LaTeX errors:
! LaTeX Error: File `a4wide.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
./phyclust-include/jss.cls:72: ==> Fatal error occurred, no output PDF file pr
oduced!
Calls: buildVignettes -> texi2pdf -> texi2dvi
Execution halted
Flavor: r-release-osx-x86_64-mavericks
Version: 0.1-15
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-release-osx-x86_64-snowleopard