CRAN Package Check Results for Package msSurv

Last updated on 2014-10-02 01:48:21.

Check Details

Version: 1.1-2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘class’ ‘graph’ ‘lattice’ ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-2
Check: R code for possible problems
Result: NOTE
    AJ.estimator: no visible global function definition for ‘nodes’
    Add.States: no visible global function definition for ‘nodes’
    Add.States: no visible global function definition for ‘edges’
    BS.var: no visible global function definition for ‘nodes’
    BS.var: no visible global function definition for ‘inEdges’
    BS.var: no visible global function definition for ‘edges’
    BS.var: no visible global function definition for ‘acc’
    CP: no visible global function definition for ‘edges’
    CP: no visible global function definition for ‘nodes’
    CP: no visible global function definition for ‘inEdges’
    Dist: no visible global function definition for ‘inEdges’
    Dist: no visible global function definition for ‘edges’
    Dist: no visible global function definition for ‘nodes’
    Dist: no visible global function definition for ‘acc’
    Dist.CIs: no visible global function definition for ‘nodes’
    EntryExit: no visible global function definition for ‘inEdges’
    EntryExit: no visible global function definition for ‘nodes’
    EntryExit: no visible global function definition for ‘edges’
    MSM.CIs: no visible global function definition for ‘nodes’
    Pst: no visible global function definition for ‘nodes’
    Red : <anonymous>: no visible global function definition for ‘nodes’
    Red: no visible global function definition for ‘edges’
    SOPt: no visible global function definition for ‘nodes’
    msSurv: no visible global function definition for ‘nodes’
    var.fn: no visible global function definition for ‘nodes’
    show,msSurv: no visible global function definition for ‘edges’
    show,msSurv: no visible global function definition for ‘nodes’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.1-2
Check: Rd line widths
Result: NOTE
    Rd file 'LTRCdata.Rd':
     \examples lines wider than 100 characters:
     data1 <- data.frame(id=1:length(t1), start=left[well.start], stop=t1, start.stage=1, end.stage=end.stage)
    
    Rd file 'RCdata.Rd':
     \examples lines wider than 100 characters:
     death24 <- round(qweibull(pweibull(ill, shape=2) + runif(n1, 0, 1)*(1-pweibull(ill, shape=2)), shape=2), digits=4)
     death25 <- round(qweibull(pweibull(ill, shape=2) + runif(n1, 0, 1)*(1-pweibull(ill, shape=2)), shape=2), digits=4)
     stage[ind] <- ifelse(censor[ind]<death24[ind] & censor[ind]<death25[ind], 0, ifelse(death24[ind]<death25[ind], 4, 5))
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1-2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: class
    Loading required package: graph
    Loading required package: lattice
    Warning in sqrt(var) : NaNs produced
    Warning in sqrt(var) : NaNs produced
    Loading required package: KMsurv
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'msSurv.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `relsize.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    test/msSurv/vignettes/msSurv.tex:17: ==> Fatal error occurred, no output PDF f
    ile produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks