CRAN Package Check Results for Package lmmlasso

Last updated on 2014-10-02 01:48:19.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.1-2	0.90	20.36	21.26	NOTE
r-devel-linux-x86_64-debian-gcc	0.1-2	1.21	19.82	21.03	NOTE
r-devel-linux-x86_64-fedora-clang	0.1-2			44.69	NOTE
r-devel-linux-x86_64-fedora-gcc	0.1-2			40.72	NOTE
r-devel-osx-x86_64-clang	0.1-2			39.82	NOTE
r-devel-windows-ix86+x86_64	0.1-2	4.00	34.00	38.00	NOTE
r-patched-linux-x86_64	0.1-2	1.00	21.60	22.60	NOTE
r-patched-solaris-sparc	0.1-2			299.80	NOTE
r-patched-solaris-x86	0.1-2			60.80	NOTE
r-release-linux-ix86	0.1-2	1.35	28.40	29.75	NOTE
r-release-linux-x86_64	0.1-2	0.99	21.47	22.46	NOTE
r-release-osx-x86_64-mavericks	0.1-2				NOTE
r-release-osx-x86_64-snowleopard	0.1-2				NOTE
r-release-windows-ix86+x86_64	0.1-2	4.00	39.00	43.00	NOTE
r-oldrel-windows-ix86+x86_64	0.1-2	6.00	35.00	41.00	NOTE

Check Details

Version: 0.1-2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘emulator’ ‘methods’ ‘miscTools’ ‘penalized’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-2
Check: R code for possible problems
Result: NOTE
    File ‘lmmlasso/R/zzz.R’:
     .onAttach calls:
     cat("----------------------------------------------------------------------", "This is a test release of the package 'lmmlasso'. If you have any questions or problems, do not hesitate to contact the author.", "----------------------------------------------------------------------", sep = "\n")

    Package startup functions should use ‘packageStartupMessage’ to
     generate messages.
    See section ‘Good practice’ in '?.onAttach'.

    LambdaInv: no visible global function definition for ‘quad.tform’
    MLloglik: no visible global function definition for ‘quad.form’
    MLpdSym: no visible global function definition for ‘triang’
    MLpdSym: no visible global function definition for ‘vecli’
    MLpdSymLambda: no visible global function definition for ‘quad.tform’
    MLsigmaZPsiZt: no visible global function definition for ‘quad.tform’
    ObjFunction : tResLRes: no visible global function definition for
     ‘quad.form’
    covStartingValues : optimize3: no visible global function definition
     for ‘quad.form.inv’
    lmmlasso.default: no visible global function definition for ‘optL1’
    lmmlasso.default: no visible global function definition for ‘optL2’
    lmmlasso.default: no visible global function definition for ‘vecli’
    lmmlasso.default: no visible global function definition for ‘triang’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 0.1-2
Check: Rd line widths
Result: NOTE
    Rd file 'plot.lmmlasso.Rd':
     \examples lines wider than 100 characters:
     fit <- lmmlasso(x=classroomStudy$X,y=classroomStudy$y,z=classroomStudy$Z,grp=classroomStudy$grp,lambda=15,pdMat="pdIdent")

    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64