Last updated on 2014-10-02 01:48:23.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.5-0 | 1.14 | 27.38 | 28.52 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.5-0 | 1.08 | 27.39 | 28.47 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.5-0 | 62.52 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.5-0 | 63.71 | NOTE | |||
| r-devel-osx-x86_64-clang | 1.5-0 | 47.29 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.5-0 | 3.00 | 46.00 | 49.00 | NOTE | |
| r-patched-linux-x86_64 | 1.5-0 | 1.16 | 28.37 | 29.53 | NOTE | |
| r-patched-solaris-sparc | 1.5-0 | 325.40 | NOTE | |||
| r-patched-solaris-x86 | 1.5-0 | 76.00 | NOTE | |||
| r-release-linux-ix86 | 1.5-0 | 1.49 | 38.17 | 39.66 | NOTE | |
| r-release-linux-x86_64 | 1.5-0 | 1.08 | 28.74 | 29.82 | NOTE | |
| r-release-osx-x86_64-mavericks | 1.5-0 | NOTE | ||||
| r-release-osx-x86_64-snowleopard | 1.5-0 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.5-0 | 4.00 | 47.00 | 51.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 1.5-0 | 4.00 | 45.00 | 49.00 | NOTE |
Version: 1.5-0
Check: dependencies in R code
Result: NOTE
'library' or 'require' calls to packages already attached by Depends:
‘R2HTML’ ‘lattice’ ‘xtable’
Please remove these calls from your code.
Packages in Depends field not imported from:
‘R2HTML’ ‘lattice’ ‘methods’ ‘nlme’ ‘xtable’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.5-0
Check: R code for possible problems
Result: NOTE
AICcomp: warning in matrix(NA, nr = n1, nc = 7): partial argument match
of ‘nr’ to ‘nrow’
AICcomp: warning in matrix(NA, nr = n1, nc = 7): partial argument match
of ‘nc’ to ‘ncol’
RunNM: warning in pk(pkvar = data$pkvar, cov = data$cov, covnames =
nameData$covnames): partial argument match of ‘cov’ to ‘covdata’
coVar.id: warning in matrix(NA, nr = nid, nc = ncov): partial argument
match of ‘nr’ to ‘nrow’
coVar.id: warning in matrix(NA, nr = nid, nc = ncov): partial argument
match of ‘nc’ to ‘ncol’
pk: warning in matrix(NA, nr = nid, nc = ncov): partial argument match
of ‘nr’ to ‘nrow’
pk: warning in matrix(NA, nr = nid, nc = ncov): partial argument match
of ‘nc’ to ‘ncol’
HTMLtools.NONMEM : plot.TrPre : <anonymous>: no visible global function
definition for ‘xyplot’
HTMLtools.NONMEM : plot.TrPre : <anonymous> : <anonymous>: no visible
global function definition for ‘panel.xyplot’
HTMLtools.NONMEM : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.get’
HTMLtools.NONMEM : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.set’
HTMLtools.NONMEM : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.NONMEM : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘Rows’
HTMLtools.NONMEM : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.get’
HTMLtools.NONMEM : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.set’
HTMLtools.NONMEM : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.NONMEM : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘Rows’
HTMLtools.NONMEM: no visible global function definition for
‘HTMLInitFile’
HTMLtools.NONMEM: no visible global function definition for
‘HTML.title’
HTMLtools.NONMEM: no visible global function definition for ‘HTML’
HTMLtools.NONMEM: no visible global function definition for ‘HTMLplot’
HTMLtools.NONMEM: no visible global function definition for
‘HTMLEndFile’
HTMLtools.PKNLME : plot.TrPre : <anonymous>: no visible global function
definition for ‘xyplot’
HTMLtools.PKNLME : plot.TrPre : <anonymous> : <anonymous>: no visible
global function definition for ‘panel.xyplot’
HTMLtools.PKNLME : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.get’
HTMLtools.PKNLME : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.set’
HTMLtools.PKNLME : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.PKNLME : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘Rows’
HTMLtools.PKNLME : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.get’
HTMLtools.PKNLME : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.set’
HTMLtools.PKNLME : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.PKNLME : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘Rows’
HTMLtools.PKNLME: no visible global function definition for
‘HTMLInitFile’
HTMLtools.PKNLME: no visible global function definition for
‘HTML.title’
HTMLtools.PKNLME: no visible global function definition for ‘HTML’
HTMLtools.PKNLME: no visible global function definition for ‘HTMLplot’
HTMLtools.PKNLME: no visible global function definition for
‘HTMLEndFile’
HTMLtools.WinBUGS : plot.TrPre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.WinBUGS : plot.TrPre : <anonymous> : <anonymous>: no visible
global function definition for ‘panel.xyplot’
HTMLtools.WinBUGS : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.get’
HTMLtools.WinBUGS : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.set’
HTMLtools.WinBUGS : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.WinBUGS : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘Rows’
HTMLtools.WinBUGS : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.get’
HTMLtools.WinBUGS : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.set’
HTMLtools.WinBUGS : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.WinBUGS : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘Rows’
HTMLtools.WinBUGS: no visible global function definition for
‘HTMLInitFile’
HTMLtools.WinBUGS: no visible global function definition for
‘HTML.title’
HTMLtools.WinBUGS: no visible global function definition for ‘HTML’
HTMLtools.WinBUGS: no visible global function definition for ‘HTMLplot’
HTMLtools.WinBUGS: no visible global function definition for
‘HTMLEndFile’
RunNLME: no visible global function definition for ‘nlme’
bugs.plot: no visible binding for global variable ‘n.sims’
bugs.run: no visible binding for '<<-' assignment to ‘options.save’
bugs.run: no visible binding for global variable ‘options.save’
bugs.run.error: no visible binding for global variable ‘options.save’
diagtrplot.NONMEM: no visible global function definition for
‘trellis.par.get’
diagtrplot.NONMEM: no visible global function definition for
‘trellis.par.set’
diagtrplot.NONMEM: no visible global function definition for ‘xyplot’
diagtrplot.NONMEM: no visible global function definition for ‘Rows’
diagtrplot.PKNLME: no visible global function definition for
‘trellis.par.get’
diagtrplot.PKNLME: no visible global function definition for
‘trellis.par.set’
diagtrplot.PKNLME: no visible global function definition for ‘xyplot’
diagtrplot.PKNLME: no visible global function definition for ‘Rows’
diagtrplot.WinBUGS: no visible global function definition for
‘trellis.par.get’
diagtrplot.WinBUGS: no visible global function definition for
‘trellis.par.set’
diagtrplot.WinBUGS: no visible global function definition for ‘xyplot’
diagtrplot.WinBUGS: no visible global function definition for ‘Rows’
indEst: no visible global function definition for ‘xtable’
tex.NONMEM : format.NONMEM: no visible global function definition for
‘xtable’
tex.PKNLME : format.NLME: no visible global function definition for
‘xtable’
tex.WinBUGS : format.WB: no visible global function definition for
‘xtable’
trplot.NONMEM: no visible global function definition for ‘xyplot’
trplot.NONMEM : <anonymous>: no visible global function definition for
‘panel.xyplot’
trplot.PKNLME: no visible global function definition for ‘xyplot’
trplot.PKNLME : <anonymous>: no visible global function definition for
‘panel.xyplot’
trplot.WinBUGS: no visible global function definition for ‘xyplot’
trplot.WinBUGS : <anonymous>: no visible global function definition for
‘panel.xyplot’
Found the following calls to attach():
File ‘PKtools/R/PKtools.R’:
attach(a, name = name)
See section ‘Good practice’ in ‘?attach’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.5-0
Check: Rd line widths
Result: NOTE
Rd file 'indEst.Rd':
\examples lines wider than 100 characters:
if (out==0) print(try(indEst(PKNLMEobject=results.nlme5, NMobject=results5, WBobject=WB2, outputType="R")))
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.5-0
Check: R code for possible problems
Result: NOTE
AICcomp: warning in matrix(NA, nr = n1, nc = 7): partial argument match
of 'nr' to 'nrow'
AICcomp: warning in matrix(NA, nr = n1, nc = 7): partial argument match
of 'nc' to 'ncol'
RunNM: warning in pk(pkvar = data$pkvar, cov = data$cov, covnames =
nameData$covnames): partial argument match of 'cov' to 'covdata'
coVar.id: warning in matrix(NA, nr = nid, nc = ncov): partial argument
match of 'nr' to 'nrow'
coVar.id: warning in matrix(NA, nr = nid, nc = ncov): partial argument
match of 'nc' to 'ncol'
pk: warning in matrix(NA, nr = nid, nc = ncov): partial argument match
of 'nr' to 'nrow'
pk: warning in matrix(NA, nr = nid, nc = ncov): partial argument match
of 'nc' to 'ncol'
HTMLtools.NONMEM : plot.TrPre : <anonymous>: no visible global function
definition for ‘xyplot’
HTMLtools.NONMEM : plot.TrPre : <anonymous> : <anonymous>: no visible
global function definition for ‘panel.xyplot’
HTMLtools.NONMEM : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.get’
HTMLtools.NONMEM : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.set’
HTMLtools.NONMEM : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.NONMEM : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘Rows’
HTMLtools.NONMEM : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.get’
HTMLtools.NONMEM : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.set’
HTMLtools.NONMEM : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.NONMEM : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘Rows’
HTMLtools.NONMEM: no visible global function definition for
‘HTMLInitFile’
HTMLtools.NONMEM: no visible global function definition for
‘HTML.title’
HTMLtools.NONMEM: no visible global function definition for ‘HTML’
HTMLtools.NONMEM: no visible global function definition for ‘HTMLplot’
HTMLtools.NONMEM: no visible global function definition for
‘HTMLEndFile’
HTMLtools.PKNLME : plot.TrPre : <anonymous>: no visible global function
definition for ‘xyplot’
HTMLtools.PKNLME : plot.TrPre : <anonymous> : <anonymous>: no visible
global function definition for ‘panel.xyplot’
HTMLtools.PKNLME : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.get’
HTMLtools.PKNLME : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.set’
HTMLtools.PKNLME : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.PKNLME : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘Rows’
HTMLtools.PKNLME : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.get’
HTMLtools.PKNLME : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.set’
HTMLtools.PKNLME : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.PKNLME : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘Rows’
HTMLtools.PKNLME: no visible global function definition for
‘HTMLInitFile’
HTMLtools.PKNLME: no visible global function definition for
‘HTML.title’
HTMLtools.PKNLME: no visible global function definition for ‘HTML’
HTMLtools.PKNLME: no visible global function definition for ‘HTMLplot’
HTMLtools.PKNLME: no visible global function definition for
‘HTMLEndFile’
HTMLtools.WinBUGS : plot.TrPre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.WinBUGS : plot.TrPre : <anonymous> : <anonymous>: no visible
global function definition for ‘panel.xyplot’
HTMLtools.WinBUGS : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.get’
HTMLtools.WinBUGS : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.set’
HTMLtools.WinBUGS : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.WinBUGS : diagtrploti.Pre : <anonymous>: no visible global
function definition for ‘Rows’
HTMLtools.WinBUGS : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.get’
HTMLtools.WinBUGS : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘trellis.par.set’
HTMLtools.WinBUGS : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘xyplot’
HTMLtools.WinBUGS : diagtrplotp.Pre : <anonymous>: no visible global
function definition for ‘Rows’
HTMLtools.WinBUGS: no visible global function definition for
‘HTMLInitFile’
HTMLtools.WinBUGS: no visible global function definition for
‘HTML.title’
HTMLtools.WinBUGS: no visible global function definition for ‘HTML’
HTMLtools.WinBUGS: no visible global function definition for ‘HTMLplot’
HTMLtools.WinBUGS: no visible global function definition for
‘HTMLEndFile’
RunNLME: no visible global function definition for ‘nlme’
bugs.plot: no visible binding for global variable ‘n.sims’
bugs.run: no visible binding for '<<-' assignment to ‘options.save’
bugs.run: no visible binding for global variable ‘options.save’
bugs.run.error: no visible binding for global variable ‘options.save’
diagtrplot.NONMEM: no visible global function definition for
‘trellis.par.get’
diagtrplot.NONMEM: no visible global function definition for
‘trellis.par.set’
diagtrplot.NONMEM: no visible global function definition for ‘xyplot’
diagtrplot.NONMEM: no visible global function definition for ‘Rows’
diagtrplot.PKNLME: no visible global function definition for
‘trellis.par.get’
diagtrplot.PKNLME: no visible global function definition for
‘trellis.par.set’
diagtrplot.PKNLME: no visible global function definition for ‘xyplot’
diagtrplot.PKNLME: no visible global function definition for ‘Rows’
diagtrplot.WinBUGS: no visible global function definition for
‘trellis.par.get’
diagtrplot.WinBUGS: no visible global function definition for
‘trellis.par.set’
diagtrplot.WinBUGS: no visible global function definition for ‘xyplot’
diagtrplot.WinBUGS: no visible global function definition for ‘Rows’
indEst: no visible global function definition for ‘xtable’
tex.NONMEM : format.NONMEM: no visible global function definition for
‘xtable’
tex.PKNLME : format.NLME: no visible global function definition for
‘xtable’
tex.WinBUGS : format.WB: no visible global function definition for
‘xtable’
trplot.NONMEM: no visible global function definition for ‘xyplot’
trplot.NONMEM : <anonymous>: no visible global function definition for
‘panel.xyplot’
trplot.PKNLME: no visible global function definition for ‘xyplot’
trplot.PKNLME : <anonymous>: no visible global function definition for
‘panel.xyplot’
trplot.WinBUGS: no visible global function definition for ‘xyplot’
trplot.WinBUGS : <anonymous>: no visible global function definition for
‘panel.xyplot’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64
Version: 1.5-0
Check: R code for possible problems
Result: NOTE
AICcomp: warning in matrix(NA, nr = n1, nc = 7): partial argument match
of ‘nr’ to ‘nrow’
AICcomp: warning in matrix(NA, nr = n1, nc = 7): partial argument match
of ‘nc’ to ‘ncol’
HTMLtools.NONMEM: warning in HTMLInitFile(outdir = nameDir, file =
nameFile$file, extension = "html", BackGroundColor = "#E9967A"):
partial argument match of ‘file’ to ‘filename’
HTMLtools.PKNLME: warning in HTMLInitFile(outdir = nameDir, file =
nameFile$file, extension = "html", BackGroundColor = "#E9967A"):
partial argument match of ‘file’ to ‘filename’
HTMLtools.WinBUGS: warning in HTMLInitFile(outdir = nameDir, file =
nameFile & file, extension = "html", BackGroundColor = "#E9967A"):
partial argument match of ‘file’ to ‘filename’
RunNM: warning in pk(pkvar = data$pkvar, cov = data$cov, covnames =
nameData$covnames): partial argument match of ‘cov’ to ‘covdata’
coVar.id: warning in matrix(NA, nr = nid, nc = ncov): partial argument
match of ‘nr’ to ‘nrow’
coVar.id: warning in matrix(NA, nr = nid, nc = ncov): partial argument
match of ‘nc’ to ‘ncol’
pk: warning in matrix(NA, nr = nid, nc = ncov): partial argument match
of ‘nr’ to ‘nrow’
pk: warning in matrix(NA, nr = nid, nc = ncov): partial argument match
of ‘nc’ to ‘ncol’
bugs.plot: no visible binding for global variable ‘n.sims’
bugs.run: no visible binding for '<<-' assignment to ‘options.save’
bugs.run: no visible binding for global variable ‘options.save’
bugs.run.error: no visible binding for global variable ‘options.save’
Found the following calls to attach():
File ‘PKtools/R/PKtools.R’:
attach(a, name = name)
See section ‘Good practice’ in ‘?attach’.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.5-0
Check: R code for possible problems
Result: NOTE
AICcomp: warning in matrix(NA, nr = n1, nc = 7): partial argument match
of 'nr' to 'nrow'
AICcomp: warning in matrix(NA, nr = n1, nc = 7): partial argument match
of 'nc' to 'ncol'
HTMLtools.NONMEM: warning in HTMLInitFile(outdir = nameDir, file =
nameFile$file, extension = "html", BackGroundColor = "#E9967A"):
partial argument match of 'file' to 'filename'
HTMLtools.PKNLME: warning in HTMLInitFile(outdir = nameDir, file =
nameFile$file, extension = "html", BackGroundColor = "#E9967A"):
partial argument match of 'file' to 'filename'
HTMLtools.WinBUGS: warning in HTMLInitFile(outdir = nameDir, file =
nameFile & file, extension = "html", BackGroundColor = "#E9967A"):
partial argument match of 'file' to 'filename'
RunNM: warning in pk(pkvar = data$pkvar, cov = data$cov, covnames =
nameData$covnames): partial argument match of 'cov' to 'covdata'
coVar.id: warning in matrix(NA, nr = nid, nc = ncov): partial argument
match of 'nr' to 'nrow'
coVar.id: warning in matrix(NA, nr = nid, nc = ncov): partial argument
match of 'nc' to 'ncol'
pk: warning in matrix(NA, nr = nid, nc = ncov): partial argument match
of 'nr' to 'nrow'
pk: warning in matrix(NA, nr = nid, nc = ncov): partial argument match
of 'nc' to 'ncol'
bugs.plot: no visible binding for global variable ‘n.sims’
bugs.run: no visible binding for '<<-' assignment to ‘options.save’
bugs.run: no visible binding for global variable ‘options.save’
bugs.run.error: no visible binding for global variable ‘options.save’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.5-0
Check: dependencies in R code
Result: NOTE
'library' or 'require' calls to packages already attached by Depends:
'R2HTML' 'lattice' 'xtable'
Please remove these calls from your code.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard