CRAN Package Check Results for Package PAGI

Last updated on 2014-10-02 01:48:22.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.75 269.66 271.41 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.62 269.06 270.68 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 296.75 NOTE --no-build-vignettes
r-devel-linux-x86_64-fedora-gcc 1.0 331.52 NOTE --no-build-vignettes
r-devel-osx-x86_64-clang 1.0 227.85 NOTE --no-build-vignettes
r-devel-windows-ix86+x86_64 1.0 5.00 379.00 384.00 NOTE
r-patched-linux-x86_64 1.0 1.67 309.86 311.53 NOTE
r-patched-solaris-sparc 1.0 196.30 NOTE --no-vignettes
r-patched-solaris-x86 1.0 490.50 NOTE --no-build-vignettes
r-release-linux-ix86 1.0 2.73 364.27 367.00 NOTE
r-release-linux-x86_64 1.0 1.66 289.90 291.56 NOTE
r-release-osx-x86_64-mavericks 1.0 OK
r-release-osx-x86_64-snowleopard 1.0 OK
r-release-windows-ix86+x86_64 1.0 5.00 410.00 415.00 OK
r-oldrel-windows-ix86+x86_64 1.0 6.00 366.00 372.00 OK

Check Details

Version: 1.0
Check: R code for possible problems
Result: NOTE
    CalGIF: no visible binding for global variable ‘PAGIData’
    CalGIF2: no visible binding for global variable ‘PAGIData’
    PAGI.Main: no visible binding for global variable ‘PAGIData’
    getclass.labels: no visible binding for global variable ‘ExampleData’
    getdataset: no visible binding for global variable ‘ExampleData’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'CalGIF.Rd':
     \examples lines wider than 100 characters:
     ###calculate the global influence factor (GIF) by using the random walk with restart (RWR) algorithm###
     #Each element is the GIF score and whose name correspond to gene symbol in the gene expression data.
     #Each element is the GIF score and whose name correspond to gene symbol in the gene expression data.
    
    Rd file 'PAGI.Main.Rd':
     \examples lines wider than 100 characters:
     #Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
     #"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
     #Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
     #"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Flags: --no-build-vignettes
Check: R code for possible problems
Result: NOTE
    CalGIF: no visible binding for global variable ‘PAGIData’
    CalGIF2: no visible binding for global variable ‘PAGIData’
    PAGI.Main: no visible binding for global variable ‘PAGIData’
    getclass.labels: no visible binding for global variable ‘ExampleData’
    getdataset: no visible binding for global variable ‘ExampleData’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.0
Flags: --no-build-vignettes
Check: Rd line widths
Result: NOTE
    Rd file 'CalGIF.Rd':
     \examples lines wider than 100 characters:
     ###calculate the global influence factor (GIF) by using the random walk with restart (RWR) algorithm###
     #Each element is the GIF score and whose name correspond to gene symbol in the gene expression data.
     #Each element is the GIF score and whose name correspond to gene symbol in the gene expression data.
    
    Rd file 'PAGI.Main.Rd':
     \examples lines wider than 100 characters:
     #Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
     #"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
     #Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
     #"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     data 1.6Mb
     localdata 3.1Mb
Flavor: r-patched-solaris-sparc

Version: 1.0
Flags: --no-build-vignettes
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     data 1.6Mb
     localdata 3.1Mb
Flavor: r-patched-solaris-x86

Version: 1.0
Check: installed package size
Result: NOTE
     installed size is 5.0Mb
     sub-directories of 1Mb or more:
     data 1.6Mb
     localdata 3.1Mb
Flavor: r-release-linux-ix86