CRAN Package Check Results for Package LDheatmap

Last updated on 2014-10-02 01:48:19.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.99-1 0.87 28.67 29.54 NOTE
r-devel-linux-x86_64-debian-gcc 0.99-1 0.90 28.28 29.18 NOTE
r-devel-linux-x86_64-fedora-clang 0.99-1 63.79 NOTE
r-devel-linux-x86_64-fedora-gcc 0.99-1 65.99 NOTE
r-devel-osx-x86_64-clang 0.99-1 58.61 NOTE
r-devel-windows-ix86+x86_64 0.99-1 3.00 44.00 47.00 NOTE
r-patched-linux-x86_64 0.99-1 0.90 36.61 37.50 NOTE
r-patched-solaris-sparc 0.99-1 463.80 NOTE
r-patched-solaris-x86 0.99-1 98.80 NOTE
r-release-linux-ix86 0.99-1 1.31 49.75 51.06 OK
r-release-linux-x86_64 0.99-1 0.87 39.09 39.96 OK
r-release-osx-x86_64-mavericks 0.99-1 ERROR
r-release-osx-x86_64-snowleopard 0.99-1 OK
r-release-windows-ix86+x86_64 0.99-1 3.00 61.00 64.00 OK
r-oldrel-windows-ix86+x86_64 0.99-1 3.00 54.00 57.00 OK

Check Details

Version: 0.99-1
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘grid’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.99-1
Check: R code for possible problems
Result: NOTE
    LDheatmap : makeImageRect: no visible global function definition for
     ‘rectGrob’
    LDheatmap : makeImageRect: no visible global function definition for
     ‘gpar’
    LDheatmap : makeImageText: no visible global function definition for
     ‘textGrob’
    LDheatmap : makeImageText: no visible global function definition for
     ‘gpar’
    LDheatmap : LDheatmap.Legend.add: no visible global function definition
     for ‘viewport’
    LDheatmap : LDheatmap.Legend.add: no visible global function definition
     for ‘textGrob’
    LDheatmap : LDheatmap.Legend.add: no visible global function definition
     for ‘gpar’
    LDheatmap : LDheatmap.Legend.add: no visible global function definition
     for ‘segmentsGrob’
    LDheatmap : LDheatmap.Legend.add: no visible global function definition
     for ‘linesGrob’
    LDheatmap : LDheatmap.Legend.add: no visible global function definition
     for ‘gTree’
    LDheatmap : LDheatmap.Legend.add: no visible global function definition
     for ‘gList’
    LDheatmap : LDheatmap.Map.add: no visible global function definition
     for ‘linesGrob’
    LDheatmap : LDheatmap.Map.add: no visible global function definition
     for ‘gpar’
    LDheatmap : LDheatmap.Map.add: no visible global function definition
     for ‘segmentsGrob’
    LDheatmap : LDheatmap.Map.add: no visible global function definition
     for ‘textGrob’
    LDheatmap : LDheatmap.Map.add: no visible global function definition
     for ‘gTree’
    LDheatmap : LDheatmap.Map.add: no visible global function definition
     for ‘gList’
    LDheatmap : LDheatmap.Map.add: no visible global function definition
     for ‘pointsGrob’
    LDheatmap : LDheatmap.Map.add: no visible global function definition
     for ‘convertWidth’
    LDheatmap : LDheatmap.Map.add: no visible global function definition
     for ‘grobWidth’
    LDheatmap : LDheatmap.Map.add: no visible global function definition
     for ‘editGrob’
    LDheatmap : LDheatmap.Map.add: no visible global function definition
     for ‘unit’
    LDheatmap: no visible global function definition for ‘ld.snp’
    LDheatmap: no visible global function definition for ‘viewport’
    LDheatmap: no visible global function definition for ‘unit’
    LDheatmap: no visible global function definition for ‘grid.newpage’
    LDheatmap: no visible global function definition for ‘textGrob’
    LDheatmap: no visible global function definition for ‘gpar’
    LDheatmap: no visible global function definition for ‘editGrob’
    LDheatmap: no visible global function definition for ‘gTree’
    LDheatmap: no visible global function definition for ‘gList’
    LDheatmap: no visible global function definition for ‘grid.draw’
    LDheatmap: no visible global function definition for ‘downViewport’
    LDheatmap: no visible global function definition for ‘popViewport’
    LDheatmap.addGenes: no visible global function definition for
     ‘pushViewport’
    LDheatmap.addGenes: no visible global function definition for ‘vpStack’
    LDheatmap.addGenes: no visible global function definition for
     ‘editGrob’
    LDheatmap.addGenes: no visible global function definition for ‘addGrob’
    LDheatmap.addGrob: no visible global function definition for ‘unit’
    LDheatmap.addGrob: no visible global function definition for ‘vpStack’
    LDheatmap.addGrob: no visible global function definition for ‘gTree’
    LDheatmap.addGrob: no visible global function definition for ‘gList’
    LDheatmap.addGrob: no visible global function definition for ‘addGrob’
    LDheatmap.addRecombRate: no visible global function definition for
     ‘unit’
    LDheatmap.addRecombRate: no visible global function definition for
     ‘pushViewport’
    LDheatmap.addRecombRate: no visible global function definition for
     ‘vpStack’
    LDheatmap.addRecombRate: no visible global function definition for
     ‘editGrob’
    LDheatmap.addRecombRate: no visible global function definition for
     ‘addGrob’
    LDheatmap.addScatterplot: no visible global function definition for
     ‘unit’
    LDheatmap.addScatterplot: no visible global function definition for
     ‘linesGrob’
    LDheatmap.addScatterplot: no visible global function definition for
     ‘yaxisGrob’
    LDheatmap.addScatterplot: no visible global function definition for
     ‘gpar’
    LDheatmap.addScatterplot: no visible global function definition for
     ‘textGrob’
    LDheatmap.addScatterplot: no visible global function definition for
     ‘vpStack’
    LDheatmap.addScatterplot: no visible global function definition for
     ‘gTree’
    LDheatmap.addScatterplot: no visible global function definition for
     ‘gList’
    LDheatmap.addScatterplot: no visible global function definition for
     ‘pointsGrob’
    LDheatmap.addScatterplot: no visible global function definition for
     ‘addGrob’
    LDheatmap.highlight: no visible global function definition for
     ‘current.vpTree’
    LDheatmap.highlight: no visible global function definition for
     ‘seekViewport’
    LDheatmap.highlight: no visible global function definition for
     ‘pushViewport’
    LDheatmap.highlight: no visible global function definition for
     ‘polygonGrob’
    LDheatmap.highlight: no visible global function definition for ‘gpar’
    LDheatmap.highlight: no visible global function definition for
     ‘grid.draw’
    LDheatmap.highlight: no visible global function definition for
     ‘upViewport’
    LDheatmap.highlight: no visible global function definition for
     ‘popViewport’
    LDheatmap.marks: no visible global function definition for ‘gpar’
    LDheatmap.marks: no visible global function definition for
     ‘current.vpTree’
    LDheatmap.marks: no visible global function definition for
     ‘seekViewport’
    LDheatmap.marks: no visible global function definition for
     ‘pushViewport’
    LDheatmap.marks: no visible global function definition for ‘pointsGrob’
    LDheatmap.marks: no visible global function definition for ‘gTree’
    LDheatmap.marks: no visible global function definition for ‘gList’
    LDheatmap.marks: no visible global function definition for ‘grid.draw’
    LDheatmap.marks: no visible global function definition for ‘upViewport’
    LDheatmap.marks: no visible global function definition for
     ‘popViewport’
    constructVP: no visible global function definition for ‘convertX’
    constructVP: no visible global function definition for ‘getGrob’
    constructVP: no visible global function definition for ‘viewport’
    drawLDheatmapGrob: no visible global function definition for ‘convertY’
    drawLDheatmapGrob: no visible global function definition for ‘getGrob’
    drawLDheatmapGrob: no visible global function definition for ‘viewport’
    drawLDheatmapGrob: no visible global function definition for ‘gpar’
    drawLDheatmapGrob: no visible global function definition for
     ‘grid.newpage’
    drawLDheatmapGrob: no visible global function definition for
     ‘pushViewport’
    drawLDheatmapGrob: no visible global function definition for
     ‘grid.draw’
    drawLDheatmapGrob: no visible global function definition for
     ‘popViewport’
    moveTitles: no visible global function definition for ‘convertX’
    moveTitles: no visible global function definition for ‘getGrob’
    moveTitles: no visible global function definition for ‘editGrob’
    moveTitles: no visible global function definition for ‘unit’
    moveTitles: no visible global function definition for ‘grid.newpage’
    moveTitles: no visible global function definition for ‘grid.draw’
    moveTitles: no visible global function definition for ‘pushViewport’
    moveTitles: no visible global function definition for
     ‘current.transform’
    moveTitles: no visible global function definition for ‘upViewport’
    moveTitles: no visible global function definition for ‘convertY’
    moveTitles: no visible global function definition for ‘convertHeight’
    moveTitles: no visible global function definition for ‘grobHeight’
    plotGenes: no visible global function definition for ‘viewport’
    plotGenes: no visible global function definition for ‘convertX’
    plotGenes: no visible global function definition for ‘browserSession’
    plotGenes: no visible global function definition for ‘genome<-’
    plotGenes: no visible global function definition for ‘ucscTableQuery’
    plotGenes: no visible global function definition for
     ‘GRangesForUCSCGenome’
    plotGenes: no visible global function definition for ‘IRanges’
    plotGenes: no visible global function definition for ‘getTable’
    plotGenes: no visible global function definition for ‘tableNames’
    plotGenes: no visible global function definition for ‘convertWidth’
    plotGenes: no visible global function definition for ‘grobWidth’
    plotGenes: no visible global function definition for ‘textGrob’
    plotGenes: no visible global function definition for ‘gpar’
    plotGenes: no visible global function definition for ‘unit’
    plotGenes: no visible global function definition for ‘gTree’
    plotGenes: no visible global function definition for ‘gList’
    plotGenes: no visible global function definition for ‘linesGrob’
    plotGenes: no visible global function definition for ‘segmentsGrob’
    plotGenes: no visible global function definition for ‘polygonGrob’
    plotGenes: no visible global function definition for ‘unit.c’
    plotGenes: no visible global function definition for ‘addGrob’
    plotGenes: no visible global function definition for ‘grid.draw’
    postDrawDetails.ldheatmap: no visible global function definition for
     ‘popViewport’
    postDrawDetails.symbols: no visible global function definition for
     ‘popViewport’
    preDrawDetails.ldheatmap: no visible global function definition for
     ‘convertX’
    preDrawDetails.ldheatmap: no visible global function definition for
     ‘unit’
    preDrawDetails.ldheatmap: no visible global function definition for
     ‘rectGrob’
    preDrawDetails.ldheatmap: no visible global function definition for
     ‘pushViewport’
    preDrawDetails.ldheatmap: no visible global function definition for
     ‘viewport’
    preDrawDetails.ldheatmap: no visible global function definition for
     ‘gpar’
    preDrawDetails.symbols: no visible global function definition for
     ‘convertX’
    preDrawDetails.symbols: no visible global function definition for
     ‘unit’
    preDrawDetails.symbols: no visible global function definition for
     ‘rectGrob’
    preDrawDetails.symbols: no visible global function definition for
     ‘pushViewport’
    preDrawDetails.symbols: no visible global function definition for
     ‘viewport’
    preDrawDetails.symbols: no visible global function definition for
     ‘gpar’
    recombRate: no visible global function definition for ‘viewport’
    recombRate: no visible global function definition for ‘convertX’
    recombRate: no visible global function definition for ‘browserSession’
    recombRate: no visible global function definition for ‘genome<-’
    recombRate: no visible global function definition for ‘ucscTableQuery’
    recombRate: no visible global function definition for
     ‘GRangesForUCSCGenome’
    recombRate: no visible global function definition for ‘IRanges’
    recombRate: no visible global function definition for ‘getTable’
    recombRate: no visible global function definition for ‘textGrob’
    recombRate: no visible global function definition for ‘gpar’
    recombRate: no visible global function definition for ‘unit’
    recombRate: no visible global function definition for ‘editGrob’
    recombRate: no visible global function definition for ‘convertWidth’
    recombRate: no visible global function definition for ‘grobWidth’
    recombRate: no visible global function definition for ‘gTree’
    recombRate: no visible global function definition for ‘gList’
    recombRate: no visible global function definition for ‘rectGrob’
    recombRate: no visible global function definition for ‘addGrob’
    recombRate: no visible global function definition for ‘grid.draw’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 0.99-1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘rtracklayer’ ‘GenomicRanges’ ‘chopsticks’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.99-1
Check: R code for possible problems
Result: NOTE
    LDheatmap: no visible global function definition for ‘ld.snp’
    plotGenes: no visible global function definition for ‘browserSession’
    plotGenes: no visible global function definition for ‘genome<-’
    plotGenes: no visible global function definition for ‘ucscTableQuery’
    plotGenes: no visible global function definition for
     ‘GRangesForUCSCGenome’
    plotGenes: no visible global function definition for ‘IRanges’
    plotGenes: no visible global function definition for ‘getTable’
    plotGenes: no visible global function definition for ‘tableNames’
    recombRate: no visible global function definition for ‘browserSession’
    recombRate: no visible global function definition for ‘genome<-’
    recombRate: no visible global function definition for ‘ucscTableQuery’
    recombRate: no visible global function definition for
     ‘GRangesForUCSCGenome’
    recombRate: no visible global function definition for ‘IRanges’
    recombRate: no visible global function definition for ‘getTable’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.99-1
Check: examples
Result: ERROR
    Running examples in ‘LDheatmap-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: GIMAP5.CEU
    > ### Title: Example data set for LDheatmap
    > ### Aliases: GIMAP5.CEU
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > data(GIMAP5.CEU)
    > LDheatmap(GIMAP5.CEU$snp.data,GIMAP5.CEU$snp.support$Position)
    Loading required package: chopsticks
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘chopsticks’
    Error in LDheatmap(GIMAP5.CEU$snp.data, GIMAP5.CEU$snp.support$Position) :
     could not find function "ld.snp"
    Execution halted
Flavor: r-release-osx-x86_64-mavericks