Last updated on 2014-10-02 01:48:19.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.99-1 | 0.87 | 28.67 | 29.54 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.99-1 | 0.90 | 28.28 | 29.18 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.99-1 | 63.79 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.99-1 | 65.99 | NOTE | |||
| r-devel-osx-x86_64-clang | 0.99-1 | 58.61 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 0.99-1 | 3.00 | 44.00 | 47.00 | NOTE | |
| r-patched-linux-x86_64 | 0.99-1 | 0.90 | 36.61 | 37.50 | NOTE | |
| r-patched-solaris-sparc | 0.99-1 | 463.80 | NOTE | |||
| r-patched-solaris-x86 | 0.99-1 | 98.80 | NOTE | |||
| r-release-linux-ix86 | 0.99-1 | 1.31 | 49.75 | 51.06 | OK | |
| r-release-linux-x86_64 | 0.99-1 | 0.87 | 39.09 | 39.96 | OK | |
| r-release-osx-x86_64-mavericks | 0.99-1 | ERROR | ||||
| r-release-osx-x86_64-snowleopard | 0.99-1 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.99-1 | 3.00 | 61.00 | 64.00 | OK | |
| r-oldrel-windows-ix86+x86_64 | 0.99-1 | 3.00 | 54.00 | 57.00 | OK |
Version: 0.99-1
Check: dependencies in R code
Result: NOTE
Package in Depends field not imported from: ‘grid’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86
Version: 0.99-1
Check: R code for possible problems
Result: NOTE
LDheatmap : makeImageRect: no visible global function definition for
‘rectGrob’
LDheatmap : makeImageRect: no visible global function definition for
‘gpar’
LDheatmap : makeImageText: no visible global function definition for
‘textGrob’
LDheatmap : makeImageText: no visible global function definition for
‘gpar’
LDheatmap : LDheatmap.Legend.add: no visible global function definition
for ‘viewport’
LDheatmap : LDheatmap.Legend.add: no visible global function definition
for ‘textGrob’
LDheatmap : LDheatmap.Legend.add: no visible global function definition
for ‘gpar’
LDheatmap : LDheatmap.Legend.add: no visible global function definition
for ‘segmentsGrob’
LDheatmap : LDheatmap.Legend.add: no visible global function definition
for ‘linesGrob’
LDheatmap : LDheatmap.Legend.add: no visible global function definition
for ‘gTree’
LDheatmap : LDheatmap.Legend.add: no visible global function definition
for ‘gList’
LDheatmap : LDheatmap.Map.add: no visible global function definition
for ‘linesGrob’
LDheatmap : LDheatmap.Map.add: no visible global function definition
for ‘gpar’
LDheatmap : LDheatmap.Map.add: no visible global function definition
for ‘segmentsGrob’
LDheatmap : LDheatmap.Map.add: no visible global function definition
for ‘textGrob’
LDheatmap : LDheatmap.Map.add: no visible global function definition
for ‘gTree’
LDheatmap : LDheatmap.Map.add: no visible global function definition
for ‘gList’
LDheatmap : LDheatmap.Map.add: no visible global function definition
for ‘pointsGrob’
LDheatmap : LDheatmap.Map.add: no visible global function definition
for ‘convertWidth’
LDheatmap : LDheatmap.Map.add: no visible global function definition
for ‘grobWidth’
LDheatmap : LDheatmap.Map.add: no visible global function definition
for ‘editGrob’
LDheatmap : LDheatmap.Map.add: no visible global function definition
for ‘unit’
LDheatmap: no visible global function definition for ‘ld.snp’
LDheatmap: no visible global function definition for ‘viewport’
LDheatmap: no visible global function definition for ‘unit’
LDheatmap: no visible global function definition for ‘grid.newpage’
LDheatmap: no visible global function definition for ‘textGrob’
LDheatmap: no visible global function definition for ‘gpar’
LDheatmap: no visible global function definition for ‘editGrob’
LDheatmap: no visible global function definition for ‘gTree’
LDheatmap: no visible global function definition for ‘gList’
LDheatmap: no visible global function definition for ‘grid.draw’
LDheatmap: no visible global function definition for ‘downViewport’
LDheatmap: no visible global function definition for ‘popViewport’
LDheatmap.addGenes: no visible global function definition for
‘pushViewport’
LDheatmap.addGenes: no visible global function definition for ‘vpStack’
LDheatmap.addGenes: no visible global function definition for
‘editGrob’
LDheatmap.addGenes: no visible global function definition for ‘addGrob’
LDheatmap.addGrob: no visible global function definition for ‘unit’
LDheatmap.addGrob: no visible global function definition for ‘vpStack’
LDheatmap.addGrob: no visible global function definition for ‘gTree’
LDheatmap.addGrob: no visible global function definition for ‘gList’
LDheatmap.addGrob: no visible global function definition for ‘addGrob’
LDheatmap.addRecombRate: no visible global function definition for
‘unit’
LDheatmap.addRecombRate: no visible global function definition for
‘pushViewport’
LDheatmap.addRecombRate: no visible global function definition for
‘vpStack’
LDheatmap.addRecombRate: no visible global function definition for
‘editGrob’
LDheatmap.addRecombRate: no visible global function definition for
‘addGrob’
LDheatmap.addScatterplot: no visible global function definition for
‘unit’
LDheatmap.addScatterplot: no visible global function definition for
‘linesGrob’
LDheatmap.addScatterplot: no visible global function definition for
‘yaxisGrob’
LDheatmap.addScatterplot: no visible global function definition for
‘gpar’
LDheatmap.addScatterplot: no visible global function definition for
‘textGrob’
LDheatmap.addScatterplot: no visible global function definition for
‘vpStack’
LDheatmap.addScatterplot: no visible global function definition for
‘gTree’
LDheatmap.addScatterplot: no visible global function definition for
‘gList’
LDheatmap.addScatterplot: no visible global function definition for
‘pointsGrob’
LDheatmap.addScatterplot: no visible global function definition for
‘addGrob’
LDheatmap.highlight: no visible global function definition for
‘current.vpTree’
LDheatmap.highlight: no visible global function definition for
‘seekViewport’
LDheatmap.highlight: no visible global function definition for
‘pushViewport’
LDheatmap.highlight: no visible global function definition for
‘polygonGrob’
LDheatmap.highlight: no visible global function definition for ‘gpar’
LDheatmap.highlight: no visible global function definition for
‘grid.draw’
LDheatmap.highlight: no visible global function definition for
‘upViewport’
LDheatmap.highlight: no visible global function definition for
‘popViewport’
LDheatmap.marks: no visible global function definition for ‘gpar’
LDheatmap.marks: no visible global function definition for
‘current.vpTree’
LDheatmap.marks: no visible global function definition for
‘seekViewport’
LDheatmap.marks: no visible global function definition for
‘pushViewport’
LDheatmap.marks: no visible global function definition for ‘pointsGrob’
LDheatmap.marks: no visible global function definition for ‘gTree’
LDheatmap.marks: no visible global function definition for ‘gList’
LDheatmap.marks: no visible global function definition for ‘grid.draw’
LDheatmap.marks: no visible global function definition for ‘upViewport’
LDheatmap.marks: no visible global function definition for
‘popViewport’
constructVP: no visible global function definition for ‘convertX’
constructVP: no visible global function definition for ‘getGrob’
constructVP: no visible global function definition for ‘viewport’
drawLDheatmapGrob: no visible global function definition for ‘convertY’
drawLDheatmapGrob: no visible global function definition for ‘getGrob’
drawLDheatmapGrob: no visible global function definition for ‘viewport’
drawLDheatmapGrob: no visible global function definition for ‘gpar’
drawLDheatmapGrob: no visible global function definition for
‘grid.newpage’
drawLDheatmapGrob: no visible global function definition for
‘pushViewport’
drawLDheatmapGrob: no visible global function definition for
‘grid.draw’
drawLDheatmapGrob: no visible global function definition for
‘popViewport’
moveTitles: no visible global function definition for ‘convertX’
moveTitles: no visible global function definition for ‘getGrob’
moveTitles: no visible global function definition for ‘editGrob’
moveTitles: no visible global function definition for ‘unit’
moveTitles: no visible global function definition for ‘grid.newpage’
moveTitles: no visible global function definition for ‘grid.draw’
moveTitles: no visible global function definition for ‘pushViewport’
moveTitles: no visible global function definition for
‘current.transform’
moveTitles: no visible global function definition for ‘upViewport’
moveTitles: no visible global function definition for ‘convertY’
moveTitles: no visible global function definition for ‘convertHeight’
moveTitles: no visible global function definition for ‘grobHeight’
plotGenes: no visible global function definition for ‘viewport’
plotGenes: no visible global function definition for ‘convertX’
plotGenes: no visible global function definition for ‘browserSession’
plotGenes: no visible global function definition for ‘genome<-’
plotGenes: no visible global function definition for ‘ucscTableQuery’
plotGenes: no visible global function definition for
‘GRangesForUCSCGenome’
plotGenes: no visible global function definition for ‘IRanges’
plotGenes: no visible global function definition for ‘getTable’
plotGenes: no visible global function definition for ‘tableNames’
plotGenes: no visible global function definition for ‘convertWidth’
plotGenes: no visible global function definition for ‘grobWidth’
plotGenes: no visible global function definition for ‘textGrob’
plotGenes: no visible global function definition for ‘gpar’
plotGenes: no visible global function definition for ‘unit’
plotGenes: no visible global function definition for ‘gTree’
plotGenes: no visible global function definition for ‘gList’
plotGenes: no visible global function definition for ‘linesGrob’
plotGenes: no visible global function definition for ‘segmentsGrob’
plotGenes: no visible global function definition for ‘polygonGrob’
plotGenes: no visible global function definition for ‘unit.c’
plotGenes: no visible global function definition for ‘addGrob’
plotGenes: no visible global function definition for ‘grid.draw’
postDrawDetails.ldheatmap: no visible global function definition for
‘popViewport’
postDrawDetails.symbols: no visible global function definition for
‘popViewport’
preDrawDetails.ldheatmap: no visible global function definition for
‘convertX’
preDrawDetails.ldheatmap: no visible global function definition for
‘unit’
preDrawDetails.ldheatmap: no visible global function definition for
‘rectGrob’
preDrawDetails.ldheatmap: no visible global function definition for
‘pushViewport’
preDrawDetails.ldheatmap: no visible global function definition for
‘viewport’
preDrawDetails.ldheatmap: no visible global function definition for
‘gpar’
preDrawDetails.symbols: no visible global function definition for
‘convertX’
preDrawDetails.symbols: no visible global function definition for
‘unit’
preDrawDetails.symbols: no visible global function definition for
‘rectGrob’
preDrawDetails.symbols: no visible global function definition for
‘pushViewport’
preDrawDetails.symbols: no visible global function definition for
‘viewport’
preDrawDetails.symbols: no visible global function definition for
‘gpar’
recombRate: no visible global function definition for ‘viewport’
recombRate: no visible global function definition for ‘convertX’
recombRate: no visible global function definition for ‘browserSession’
recombRate: no visible global function definition for ‘genome<-’
recombRate: no visible global function definition for ‘ucscTableQuery’
recombRate: no visible global function definition for
‘GRangesForUCSCGenome’
recombRate: no visible global function definition for ‘IRanges’
recombRate: no visible global function definition for ‘getTable’
recombRate: no visible global function definition for ‘textGrob’
recombRate: no visible global function definition for ‘gpar’
recombRate: no visible global function definition for ‘unit’
recombRate: no visible global function definition for ‘editGrob’
recombRate: no visible global function definition for ‘convertWidth’
recombRate: no visible global function definition for ‘grobWidth’
recombRate: no visible global function definition for ‘gTree’
recombRate: no visible global function definition for ‘gList’
recombRate: no visible global function definition for ‘rectGrob’
recombRate: no visible global function definition for ‘addGrob’
recombRate: no visible global function definition for ‘grid.draw’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64
Version: 0.99-1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
‘rtracklayer’ ‘GenomicRanges’ ‘chopsticks’
Flavor: r-release-osx-x86_64-mavericks
Version: 0.99-1
Check: R code for possible problems
Result: NOTE
LDheatmap: no visible global function definition for ‘ld.snp’
plotGenes: no visible global function definition for ‘browserSession’
plotGenes: no visible global function definition for ‘genome<-’
plotGenes: no visible global function definition for ‘ucscTableQuery’
plotGenes: no visible global function definition for
‘GRangesForUCSCGenome’
plotGenes: no visible global function definition for ‘IRanges’
plotGenes: no visible global function definition for ‘getTable’
plotGenes: no visible global function definition for ‘tableNames’
recombRate: no visible global function definition for ‘browserSession’
recombRate: no visible global function definition for ‘genome<-’
recombRate: no visible global function definition for ‘ucscTableQuery’
recombRate: no visible global function definition for
‘GRangesForUCSCGenome’
recombRate: no visible global function definition for ‘IRanges’
recombRate: no visible global function definition for ‘getTable’
Flavor: r-release-osx-x86_64-mavericks
Version: 0.99-1
Check: examples
Result: ERROR
Running examples in ‘LDheatmap-Ex.R’ failed
The error most likely occurred in:
> ### Name: GIMAP5.CEU
> ### Title: Example data set for LDheatmap
> ### Aliases: GIMAP5.CEU
> ### Keywords: datasets
>
> ### ** Examples
>
> data(GIMAP5.CEU)
> LDheatmap(GIMAP5.CEU$snp.data,GIMAP5.CEU$snp.support$Position)
Loading required package: chopsticks
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘chopsticks’
Error in LDheatmap(GIMAP5.CEU$snp.data, GIMAP5.CEU$snp.support$Position) :
could not find function "ld.snp"
Execution halted
Flavor: r-release-osx-x86_64-mavericks