Last updated on 2014-10-02 01:48:12.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.1 | 12.20 | 79.29 | 91.50 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.2.1 | 11.95 | 78.40 | 90.36 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.2.1 | 192.03 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.1 | 195.38 | NOTE | |||
| r-devel-osx-x86_64-clang | 0.2.1 | 151.00 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 0.2.1 | 29.00 | 115.00 | 144.00 | NOTE | |
| r-patched-linux-x86_64 | 0.2.1 | 13.33 | 84.77 | 98.10 | NOTE | |
| r-patched-solaris-sparc | 0.2.1 | 1099.50 | NOTE | |||
| r-patched-solaris-x86 | 0.2.1 | 230.40 | NOTE | |||
| r-release-linux-ix86 | 0.2.1 | 15.90 | 100.24 | 116.14 | NOTE | |
| r-release-linux-x86_64 | 0.2.1 | 13.87 | 83.44 | 97.31 | NOTE | |
| r-release-osx-x86_64-mavericks | 0.2.1 | NOTE | ||||
| r-release-osx-x86_64-snowleopard | 0.2.1 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 0.2.1 | 29.00 | 122.00 | 151.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 0.2.1 | 28.00 | 128.00 | 156.00 | NOTE |
Version: 0.2.1
Check: dependencies in R code
Result: NOTE
'library' or 'require' calls to packages already attached by Depends:
‘ape’ ‘cladoRcpp’ ‘phylobase’ ‘rexpokit’
Please remove these calls from your code.
Packages in Depends field not imported from:
‘ape’ ‘cladoRcpp’ ‘methods’ ‘phylobase’ ‘rexpokit’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
':::' calls which should be '::':
‘ape:::floating.pie.asp’ ‘cladoRcpp:::areas_list_to_states_list_old’
See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2.1
Check: R code for possible problems
Result: NOTE
areas_list_to_states_list_new: no visible global function definition
for ‘numstates_from_numareas’
areas_list_to_states_list_new: no visible global function definition
for ‘rcpp_areas_list_to_states_list’
axisPhylo2: no visible binding for global variable ‘.PlotPhyloEnv’
bears_2param_DIVA_fast: no visible global function definition for
‘rcpp_areas_list_to_states_list’
bears_2param_DIVA_fast: no visible global function definition for
‘read.tree’
bears_2param_DIVA_fast : function_to_optim: no visible global function
definition for ‘rcpp_states_list_to_DEmat’
bears_2param_DIVA_fast: no visible global function definition for
‘rcpp_states_list_to_DEmat’
bears_2param_standard_fast: no visible global function definition for
‘rcpp_areas_list_to_states_list’
bears_2param_standard_fast: no visible global function definition for
‘read.tree’
bears_2param_standard_fast : function_to_optim: no visible global
function definition for ‘rcpp_states_list_to_DEmat’
bears_2param_standard_fast: no visible global function definition for
‘rcpp_states_list_to_DEmat’
bears_2param_standard_fast_fixnode: no visible global function
definition for ‘rcpp_areas_list_to_states_list’
bears_2param_standard_fast_fixnode: no visible global function
definition for ‘read.tree’
bears_2param_standard_fast_fixnode : function_to_optim: no visible
global function definition for ‘rcpp_states_list_to_DEmat’
bears_2param_standard_fast_fortest: no visible global function
definition for ‘rcpp_areas_list_to_states_list’
bears_2param_standard_fast_fortest: no visible global function
definition for ‘read.tree’
bears_2param_standard_fast_fortest : function_to_optim: no visible
global function definition for ‘rcpp_states_list_to_DEmat’
bears_2param_standard_fast_fortest: no visible global function
definition for ‘rcpp_states_list_to_DEmat’
bears_2param_standard_fast_symOnly: no visible global function
definition for ‘rcpp_areas_list_to_states_list’
bears_2param_standard_fast_symOnly: no visible global function
definition for ‘read.tree’
bears_2param_standard_fast_symOnly : function_to_optim: no visible
global function definition for ‘rcpp_states_list_to_DEmat’
bears_2param_standard_fast_symOnly: no visible global function
definition for ‘rcpp_states_list_to_DEmat’
bears_2param_standard_fast_symOnly_simp: no visible global function
definition for ‘rcpp_areas_list_to_states_list’
bears_2param_standard_fast_symOnly_simp: no visible global function
definition for ‘read.tree’
bears_2param_standard_fast_symOnly_simp : function_to_optim: no visible
global function definition for ‘rcpp_states_list_to_DEmat’
bears_2param_standard_fast_symOnly_simp: no visible global function
definition for ‘rcpp_states_list_to_DEmat’
bears_2param_standard_slowQ_slowSP: no visible global function
definition for ‘rcpp_areas_list_to_states_list’
bears_2param_standard_slowQ_slowSP: no visible global function
definition for ‘read.tree’
bears_2param_standard_slowQ_slowSP : function_to_optim: no visible
global function definition for ‘rcpp_states_list_to_DEmat’
bears_2param_standard_slowQ_slowSP: no visible global function
definition for ‘rcpp_states_list_to_DEmat’
bears_3param_standard_fast: no visible global function definition for
‘rcpp_areas_list_to_states_list’
bears_3param_standard_fast: no visible global function definition for
‘read.tree’
bears_3param_standard_fast : function_to_optim: no visible global
function definition for ‘rcpp_states_list_to_DEmat’
bears_3param_standard_fast: no visible global function definition for
‘rcpp_states_list_to_DEmat’
bears_3param_standard_fast_fixnode: no visible global function
definition for ‘rcpp_areas_list_to_states_list’
bears_3param_standard_fast_fixnode: no visible global function
definition for ‘read.tree’
bears_3param_standard_fast_fixnode : function_to_optim: no visible
global function definition for ‘rcpp_states_list_to_DEmat’
bears_3param_standard_fast_noJ: no visible global function definition
for ‘rcpp_areas_list_to_states_list’
bears_3param_standard_fast_noJ: no visible global function definition
for ‘read.tree’
bears_3param_standard_fast_noJ : function_to_optim: no visible global
function definition for ‘rcpp_states_list_to_DEmat’
bears_3param_standard_fast_noJ: no visible global function definition
for ‘rcpp_states_list_to_DEmat’
bears_4param_standard_fast: no visible global function definition for
‘rcpp_areas_list_to_states_list’
bears_4param_standard_fast: no visible global function definition for
‘read.tree’
bears_4param_standard_fast : function_to_optim: no visible global
function definition for ‘rcpp_states_list_to_DEmat’
bears_4param_standard_fast: no visible global function definition for
‘rcpp_states_list_to_DEmat’
bears_5param_standard_fast: no visible global function definition for
‘rcpp_areas_list_to_states_list’
bears_5param_standard_fast: no visible global function definition for
‘read.tree’
bears_5param_standard_fast : function_to_optim: no visible global
function definition for ‘rcpp_states_list_to_DEmat’
bears_5param_standard_fast: no visible global function definition for
‘rcpp_states_list_to_DEmat’
bears_5param_standard_fast_diffstart: no visible global function
definition for ‘rcpp_areas_list_to_states_list’
bears_5param_standard_fast_diffstart: no visible global function
definition for ‘read.tree’
bears_5param_standard_fast_diffstart : function_to_optim: no visible
global function definition for ‘rcpp_states_list_to_DEmat’
bears_5param_standard_fast_diffstart: no visible global function
definition for ‘rcpp_states_list_to_DEmat’
bears_5param_standard_fast_v: no visible global function definition for
‘rcpp_areas_list_to_states_list’
bears_5param_standard_fast_v: no visible global function definition for
‘read.tree’
bears_5param_standard_fast_v : function_to_optim: no visible global
function definition for ‘rcpp_states_list_to_DEmat’
bears_5param_standard_fast_v: no visible global function definition for
‘rcpp_states_list_to_DEmat’
bears_6param_standard_fast_ys_v: no visible global function definition
for ‘rcpp_areas_list_to_states_list’
bears_6param_standard_fast_ys_v: no visible global function definition
for ‘read.tree’
bears_6param_standard_fast_ys_v : function_to_optim: no visible global
function definition for ‘rcpp_states_list_to_DEmat’
bears_6param_standard_fast_ys_v: no visible global function definition
for ‘rcpp_states_list_to_DEmat’
bears_9param_standard_fast_ys_v_cb: no visible global function
definition for ‘rcpp_areas_list_to_states_list’
bears_9param_standard_fast_ys_v_cb: no visible global function
definition for ‘read.tree’
bears_9param_standard_fast_ys_v_cb : function_to_optim: no visible
global function definition for ‘rcpp_states_list_to_DEmat’
bears_9param_standard_fast_ys_v_cb: no visible global function
definition for ‘rcpp_states_list_to_DEmat’
bears_optim_run: no visible global function definition for
‘rcpp_areas_list_to_states_list’
bears_optim_run: no visible global function definition for ‘read.tree’
bears_optim_run: no visible global function definition for
‘rcpp_states_list_to_DEmat’
calc_loglike_for_optim: no visible global function definition for
‘rcpp_states_list_to_DEmat’
calc_loglike_sp: no visible global function definition for ‘mat2coo’
calc_loglike_sp: no visible global function definition for
‘rcpp_calc_anclikes_sp_COOprobs’
calc_loglike_sp: no visible global function definition for
‘rcpp_calc_anclikes_sp_COOweights_faster’
calc_loglike_sp: no visible global function definition for
‘rcpp_calc_rowsums_for_COOweights_columnar’
calc_loglike_sp: no visible global function definition for
‘expokit_dmexpv_Qmat’
calc_loglike_sp: no visible global function definition for
‘rcpp_calc_anclikes_sp’
calc_loglike_sp: no visible global function definition for
‘rcpp_calc_anclikes_sp_using_COOprobs’
calc_loglike_sp: no visible global function definition for
‘rcpp_calc_splitlikes_using_COOweights_columnar’
calc_loglike_sp: no visible global function definition for
‘expokit_dgpadm_Qmat’
calc_loglike_sp_prebyte: no visible global function definition for
‘mat2coo’
calc_loglike_sp_prebyte: no visible global function definition for
‘rcpp_calc_anclikes_sp_COOprobs’
calc_loglike_sp_prebyte: no visible global function definition for
‘rcpp_calc_anclikes_sp_COOweights_faster’
calc_loglike_sp_prebyte: no visible global function definition for
‘rcpp_calc_rowsums_for_COOweights_columnar’
calc_loglike_sp_prebyte: no visible global function definition for
‘expokit_dmexpv_Qmat’
calc_loglike_sp_prebyte: no visible global function definition for
‘rcpp_calc_anclikes_sp’
calc_loglike_sp_prebyte: no visible global function definition for
‘rcpp_calc_anclikes_sp_using_COOprobs’
calc_loglike_sp_prebyte: no visible global function definition for
‘rcpp_calc_splitlikes_using_COOweights_columnar’
calc_loglike_sp_prebyte: no visible global function definition for
‘expokit_dgpadm_Qmat’
calc_loglike_sp_stratified: no visible global function definition for
‘rcpp_states_list_to_DEmat’
calc_loglike_sp_stratified: no visible global function definition for
‘read.tree’
calc_loglike_sp_stratified: no visible global function definition for
‘mat2coo’
calc_loglike_sp_stratified: no visible global function definition for
‘rcpp_calc_anclikes_sp_COOweights_faster’
calc_loglike_sp_stratified: no visible global function definition for
‘rcpp_calc_rowsums_for_COOweights_columnar’
calc_prob_forward_onebranch_sparse: no visible global function
definition for ‘expokit_dmexpv_Qmat’
chainsaw2: no visible global function definition for ‘extract.clade’
chainsaw2: no visible global function definition for ‘drop.tip’
check_BioGeoBEARS_run: no visible global function definition for
‘read.tree’
check_BioGeoBEARS_run: no visible global function definition for
‘is.binary.tree’
check_BioGeoBEARS_run: no visible global function definition for
‘numstates_from_numareas’
get_all_daughter_tips_of_a_node: no visible global function definition
for ‘extract.clade’
get_all_node_ages: no visible global function definition for
‘dist.nodes’
get_node_ages_of_tips: no visible global function definition for
‘dist.nodes’
get_statesColors_table: no visible global function definition for
‘rcpp_areas_list_to_states_list’
given_a_starting_state_simulate_split: no visible global function
definition for ‘rcpp_calc_rowsums_for_COOweights_columnar’
map_LG_MLsplits_to_tree: no visible global function definition for
‘nodelabels’
map_LG_MLsplits_to_tree: no visible global function definition for
‘tiplabels’
map_LG_MLsplits_to_tree: no visible global function definition for
‘axisPhylo’
map_LG_MLsplits_to_tree_corners: no visible global function definition
for ‘axisPhylo’
map_LG_MLsplits_to_tree_corners: no visible global function definition
for ‘tiplabels’
map_LG_MLstates_to_tree: no visible global function definition for
‘axisPhylo’
map_LG_MLstates_to_tree: no visible global function definition for
‘nodelabels’
map_LG_MLstates_to_tree: no visible global function definition for
‘tiplabels’
map_LGpy_MLsplits_to_tree: no visible global function definition for
‘nodelabels’
map_LGpy_MLsplits_to_tree: no visible global function definition for
‘tiplabels’
map_LGpy_MLsplits_to_tree: no visible global function definition for
‘axisPhylo’
nodenums_bottom_up: no visible global function definition for ‘nNodes’
nodenums_bottom_up: no visible global function definition for ‘nTips’
nodenums_bottom_up: no visible global function definition for ‘nodeId’
plot_BioGeoBEARS_model: no visible global function definition for
‘rcpp_areas_list_to_states_list’
plot_BioGeoBEARS_results: no visible global function definition for
‘read.tree’
plot_BioGeoBEARS_results: no visible global function definition for
‘numstates_from_numareas’
plot_BioGeoBEARS_results: no visible global function definition for
‘rcpp_areas_list_to_states_list’
plot_BioGeoBEARS_results: no visible global function definition for
‘tiplabels’
plot_BioGeoBEARS_results: no visible global function definition for
‘axisPhylo’
plot_BioGeoBEARS_results: no visible global function definition for
‘nodelabels’
plot_cladogenesis_size_probabilities: no visible global function
definition for ‘rcpp_areas_list_to_states_list’
plot_cladogenesis_size_probabilities: no visible global function
definition for ‘rcpp_calc_anclikes_sp_COOweights_faster’
plot_cladogenesis_size_probabilities: no visible global function
definition for ‘rcpp_calc_rowsums_for_COOweights_columnar’
postorder_nodes_phylo4_return_table: no visible global function
definition for ‘nodeId’
postorder_nodes_phylo4_return_table: no visible global function
definition for ‘descendants’
prune_specimens_to_species: no visible global function definition for
‘axisPhylo’
prune_specimens_to_species: no visible global function definition for
‘drop.tip’
prune_specimens_to_species: no visible global function definition for
‘is.ultrametric’
readfiles_BioGeoBEARS_run: no visible global function definition for
‘read.tree’
section_the_tree: no visible global function definition for ‘read.tree’
section_the_tree: no visible global function definition for ‘axisPhylo’
simulated_indexes_to_tipranges_object: no visible global function
definition for ‘read.tree’
traverse_up: no visible global function definition for ‘children’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64
Version: 0.2.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘phylobase’
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-snowleopard