Handle genomic data within data frames just as you would with 'GRanges'. This packages provides method to deal with genomic intervals the "tidy-way" which makes it simpler to integrate in the the general data munging process. The API is inspired by the popular 'bedtools' and the genome_join() method from the 'fuzzyjoin' package.

Documentation

Manual: tidygenomics.pdf
Vignette: Tidy Genomics

Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>

Author(s): Constantin Ahlmann-Eltze*, Stan Developers* (Code from the Stan Math library is reused in 'cluster_interval.cpp'), David Robinson* (Code from the fuzzyjoin package is reused)

Install package and any missing dependencies by running this line in your R console:

install.packages("tidygenomics")

Depends
Imports dplyr, purrr, tidyr, fuzzyjoin(>=0.1.3), IRanges, Rcpp
Suggests testthat, knitr, rmarkdown
Enhances
Linking to Rcpp
Reverse
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Package tidygenomics
Materials
URL https://github.com/const-ae/tidygenomics
Task Views
Version 0.1.0
Published 2017-06-25
License GPL-3
BugReports
SystemRequirements
NeedsCompilation yes
Citation
CRAN checks tidygenomics check results
Package source tidygenomics_0.1.0.tar.gz