A set of utilities for querying HaploReg and RegulomeDB web-based tools. The package connects to HaploReg or RegulomeDB, searches and downloads results, without opening web pages, directly from R environment. Results are stored in a data frame that can be directly used in various kinds of downstream analyses.

Documentation

Manual: haploR.pdf
Vignette: Tutorial for haploR package

Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov at duke.edu>

Author(s): Ilya Y. Zhbannikov*, Konstantin G Arbeev* (Konstantin supervised the technical/software development.), Anatoliy I Yashin* (Anatoliy supervised the technical/software development and is a Principal Invesigator of this project)

Install package and any missing dependencies by running this line in your R console:

install.packages("haploR")

Depends R (>= 3.3.2)
Imports httr, XML, tibble, RUnit
Suggests knitr, rmarkdown, openxlsx
Enhances
Linking to
Reverse
depends
Reverse
imports
Reverse
suggests
Reverse
enhances
Reverse
linking to

Package haploR
Materials
URL
Task Views
Version 1.4.6
Published 2017-06-12
License GPL-3
BugReports
SystemRequirements
NeedsCompilation no
Citation
CRAN checks haploR check results
Package source haploR_1.4.6.tar.gz