Provides functions for summarizing and plotting the output from Markov Chain Monte Carlo (MCMC) simulations, as well as diagnostic tests of convergence to the equilibrium distribution of the Markov chain.

Documentation

Manual: coda.pdf
Vignette: None available.

Maintainer: Martyn Plummer <plummerm at iarc.fr>

Author(s): Martyn Plummer*, Nicky Best*, Kate Cowles*, Karen Vines*, Deepayan Sarkar*, Douglas Bates*, Russell Almond*, Arni Magnusson*

Install package and any missing dependencies by running this line in your R console:

install.packages("coda")

Depends R (>= 2.14.0)
Imports lattice
Suggests
Enhances
Linking to
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depends
adaptMCMC, adaptsmoFMRI, AdjBQR, anominate, ArchaeoPhases, B2Z, bamlss, BANOVA, bayesDccGarch, BayesFactor, BayesLCA, bayespref, BayesSAE, bayesSurv, Bayesthresh, BayesTwin, bayou, BAYSTAR, Bergm, bhm, bisoreg, BMAmevt, bmk, boral, c212, coalescentMCMC, codadiags, cplm, cubfits, dclone, eiPack, elrm, endorse, FME, gemtc, HelpersMG, HSROC, HybridMC, hzar, icenReg, iFad, InSilicoVA, lira, MasterBayes, mcgibbsit, MCMCglmm, MCMC.OTU, MCMCpack, mcmcplots, MCMC.qpcr, mcsm, ocomposition, phase1RMD, PhaseType, phcfM, popReconstruct, prevalence, R2MLwiN, R2WinBUGS, ramps, relevent, rjags, Rlda, robustsae, season, siar, SPACECAP, spatial.gev.bma, spBayes, spNNGP, spTDyn, stochvol, superdiag, TESS, Ultimixt, WMCapacity, zoib
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imports
agRee, AHMbook, arm, auRoc, BaBooN, BaM, BANFF, BayesBinMix, BayesComm, bayescount, BayesFM, bayesGARCH, BayesianTools, bayesLife, bayesmix, BayesSingleSub, bayesTFR, BayesX, Bchron, bdpopt, BDWreg, BEST, bfa, bgsmtr, blavaan, BNSP, BPEC, bridgesampling, brms, BRugs, bsam, bssm, btergm, btf, BTSPAS, BTYDplus, CARBayes, CARBayesST, conting, ctmcd, dcmle, deBInfer, DeLorean, diagis, DLMtool, DrBats, EasyMARK, eggCounts, eiwild, emdbook, EpiBayes, ergm, ergm.ego, evolqg, evolvability, fdasrvf, geiger, geoBayes, GERGM, ggdmc, glmBfp, gmt, greta, hierarchicalDS, HLSM, hSDM, IFP, immer, IRATER, jagsUI, kobe, LAM, latentnet, list, lsmeans, marked, MCMCvis, mdmb, metaBMA, MfUSampler, mixAK, MixSIAR, morse, MplusAutomation, MRH, MSBVAR, multimark, NestedCategBayesImpute, networkTomography, nimble, nLTT, nse, PANICr, pcnetmeta, phytools, plotMCMC, polySegratioMM, pomp, POUMM, ptycho, PVAClone, qrjoint, R2admb, R2jags, R2OpenBUGS, r4ss, RcmdrPlugin.RMTCJags, redist, rjmcmc, RMark, rr, runjags, rwty, SAVE, scape, SeqFeatR, simmr, sirt, sisus, slfm, sns, sparsereg, spBayesSurv, spdep, spikeSlabGAM, spTimer, sspse, stocc, TAM, TBSSurvival, tergm, tglm, TreeBUGS, tRophicPosition, wiqid, Zelig, zic, zooaRchGUI
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suggests
AdMit, amen, bayesImageS, BayHaz, BBMV, bcp, bglm, bnormnlr, broom, CARrampsOcl, DiffusionRgqd, DiffusionRimp, DiffusionRjgqd, embryogrowth, gap, GeneFeST, geoCount, geoRglm, ggmcmc, glmmTMB, HDInterval, ltbayes, Luminescence, MethComp, phybreak, polyfreqs, pscl, R2BayesX, rase, rbi, rbugs, SALTSampler, shinystan, surveillance, systemicrisk, womblR, zoo
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enhances
Reverse
linking to

Package coda
Materials
URL
Task Views Bayesian , gR
Version 0.19-1
Published 2016-12-08
License GPL (>= 2)
BugReports
SystemRequirements
NeedsCompilation no
Citation
CRAN checks coda check results
Package source coda_0.19-1.tar.gz