Pairwise evolutionary distance estimation between protein sequences with the TKF91 and TKF92 model, which consider all the possible paths of transforming from one sequence to another.

Documentation

Manual: TKF.pdf
Vignette: None available.

Maintainer: Ge Tan <ge.tan09 at imperial.ac.uk>

Author(s): Ge Tan <ge.tan09 at imperial.ac.uk>

Install package and any missing dependencies by running this line in your R console:

install.packages("TKF")

Depends R (>= 3.0.2)
Imports methods, expm, numDeriv, ape(>=3.2), phytools(>=0.4-45), phangorn(>=1.99-12)
Suggests RUnit, seqinr
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Package TKF
Materials
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Version 0.0.8
Published 2015-04-18
License GPL-2
BugReports
SystemRequirements gsl
NeedsCompilation yes
Citation
CRAN checks TKF check results
Package source TKF_0.0.8.tar.gz