A pipeline for the meta-analysis of gene expression data. We have assembled several analysis and plot functions to perform integrated multi-cohort analysis of gene expression data (meta- analysis). Methodology described in: .

Documentation

Manual: MetaIntegrator.pdf
Vignette: Analysis of gene expression data

Maintainer: Winston A. Haynes <hayneswa at stanford.edu>

Author(s): Winston A. Haynes, Francesco Vallania, Aurelie Tomczak, Timothy Sweeney, Erika Bongen, Purvesh Khatri

Install package and any missing dependencies by running this line in your R console:

install.packages("MetaIntegrator")

Depends R (>= 2.10)
Imports rmeta, multtest, ggplot2, parallel, Rmisc, reshape, gplots, Biobase, RMySQL, DBI, stringr, preprocessCore, GEOquery, GEOmetadb, RSQLite
Suggests BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics
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Package MetaIntegrator
Materials
URL http://biorxiv.org/content/early/2016/08/25/071514
Task Views MetaAnalysis
Version 1.0.3
Published 2016-09-29
License LGPL
BugReports
SystemRequirements
NeedsCompilation no
Citation
CRAN checks MetaIntegrator check results
Package source MetaIntegrator_1.0.3.tar.gz